RNA id: AMCG00004460


Basic Information

Item Value
RNA id AMCG00004460
length 2331
RNA type mRNA
GC content 0.61
exon number 14
gene id AMCG00004460
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50144710 ~ 50157745 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcttttttgtttgttttattgcagacGTAATCTGACCAAGCTGTCACTGATCTTCAGCCACATGCTGGCGGAGCTGAAGGCCATCTTTCCCAACGGCCTTTTCCAGGGCGATAACTTCAGGATCACCAAGGCAGATGCGGCCGAGTTCTGGAGGAAGTCTTTCGGTGACAAGACCATCGTGCCCTGGAAGATGTTCCGCCAGGCTCTGCACGAGTTCCACCCCATCAGCTCCGGCCTGGAAGCCATGGCACTGAAGTCTACCATCGACCTCACCTGCAATGACTACATCTCAGTCTTCGAGTTTGACATCTTCACCCGGCTCTTTCAGCCGTGGTCGTCGTTGCTGCGGAACTGGAACAGCCTGGCAGTCACACACCCCGGGTACATGGCCTTCCTGACTTACGACGAGGTTAAAGCCCGACTCCAGAAGTTCATCCACAAGCCCGGCAGCTACATATTCCGACTGAGCTGCACTCGGTTGGGTCAGTGGGCGATCGGCTACGTGACGGCAGATGGCAACATCCTGCAGACCATCCCTCACAACAAGCCCCTCTTCCAGGCACTCATCGATGGGTTCCGGGAAGGATTCTACCTGTTTCCCGATGGACGCACTCAGAACCCAGATCTCACCGGGCTGTGTGAGCCCTCACCACAGGACCATATCAAAGTCACACAGGAGCAATACGAGCTGTACTGCGAGATGGGCTCCACGTTCCAGTTGTGCAAGATCTGTGCTGAGAACGACAAAGACGTGAAGATCGAGCCCTGCGGTCACCTCATGTGTACATCGTGCCTCACTTCCTGGCAGGAGTCGGAGGGCCAGGGCTGCCCATTCTGCCGCTGTGAGATCAAGGGCACGGAGCCCATCGTGGTCGACCCCTTCGACCCCAAGGACAACAGTGGGGGCTCATATGGGGGAGGCCGCGGCATGTTCGGGGCTGAGGGCGCACCGTCCCCCAGCTacgatgacgatgatgatgacaGACTGGAGGACCCGCTGATGATGAGCAAGATGGCCTGTAACAAGGTGAGCAGCTGGGCCTCCCTGCCCCCAGTTCCCCCGCGTCTGGACCTGCTTGGGCACCGACCCTCAAACCCACCGGGGGCATCCAGTCCTGGAGCTACCTCTAAGGCCTCTGTGCATCACAAAGACAAGCCCTTGCCGCTGCCTCCAGCGCTACGGGAcctgccccctcctcccccccctgACCGCCCCCACTCTGCGGGATCCGAAGGGCGCCTGCAGCGACGGCCCCTCCCCAGCACCCCCGGGGAGCCGTCCCGCGACAAGCTGCCCCCGGCACCCCCCAACCGCGGACTGGCGGACTGGCAGCCCCGCCCCGTGCCCAAGGCCCAGCCGCTCAACCCTGGGGATGCGTGGGCAGGCAGGGAGCTGTCCAACCGCCACTCGCTGCCCCTGGCACTGCCCTCCGCCCTGGACGGCCGGCCTGAGACCCAGAGGCACAACAGCACCCTGAGCCTGGACCACCAGCTGAATTTTGGTGCCAGTGCCAGTGGAAGCCAAGAGTACGATAACCCCAAAGTCAAGCCATCGGTCTCTGCTAATGCCATCTACGCCTTGGCAGCCAGGCCTCTTCCTTCTCTGAAGCCGGTGGCAGGAGAGGAGGCGTCGGAGAGCGAGGAGGAGCCCGAGTACATGACCCCCTCGTCTCGCCCCGTCCTGCCCCCCCTCAACACCAGTGCCCCCGACACCGCCCCCCGACTCCCCCAGCCCAATTCTCTCAGCTCACGATTGGCACTGAGCGAACTGGAAACAGAAGGACTGCAGATGTATGAAGCCATGTACAACATCCAGTCCCAGGCACAGTCTTCCATCGCCCAGACAGCGAGAGACTCCGATTACTCGGACCTCCCGACGGGCAGTAGCGCAAACGGGCCTCGGGAGCcagtgagtgaggaggaggagaacgGGTACGACTTCCCCAAACCACCGCTGCCCGCTCTGGCCCGCCGCACGCTCTCCGACATCTCCAGCTCCTCGTCCGCCTTCAGCCGGCTCTCCGTGGACAACGACTCGCTGTCTCCCGCTTTTGCTGACTTAAGTCAAGCACCAGAAAGGCCTCCTAAGCCACTGCCCAGGCGGATCAATTCAGAGAGGAGGCCGAGCCCTGTGCCGCCCGGTGGAGGGGGCGGCGGGGGGAGCATGAGCCTCCAAATCAACAGTGAGATCGAGCATCTCATGAGCCAAGGCTACTCCTATCAGGACATACAGAAAGCCCTGCTGATTGCACAGAACAATATTGAAATGGCCAAGAATATCCTGAGAGAGTTTGTTTCCATTCCTTCTACGGCACACATCCTAACATAG

Function

GO: NA

KEGG:

id description
K04707 CBL; E3 ubiquitin-protein ligase CBL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10333 lncRNA downstream 8979 50127772 ~ 50135731 (-) True G8370
TU10312 lncRNA downstream 73909 50066484 ~ 50070801 (-) True AMCG00004457
TU10314 lncRNA downstream 75538 50066398 ~ 50069172 (-) False AMCG00004457
TU10303 lncRNA downstream 106355 50033396 ~ 50038355 (-) True G8350
TU10300 lncRNA downstream 124686 50019824 ~ 50020024 (-) True G8347
TU10376 lncRNA upstream 54447 50212192 ~ 50214639 (-) False AMCG00004467
TU10486 lncRNA upstream 511201 50668946 ~ 50674553 (-) True G8500
TU10492 lncRNA upstream 523885 50681630 ~ 50681962 (-) True G8505
TU10518 lncRNA upstream 536829 50694574 ~ 50694803 (-) True G8524
TU10539 lncRNA upstream 562698 50720443 ~ 50720925 (-) False AMCG00004480
AMCG00004457 mRNA downstream 72769 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004456 mRNA downstream 96636 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004447 mRNA downstream 303190 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004445 mRNA downstream 310970 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004446 mRNA downstream 321800 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004461 mRNA upstream 12331 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004465 mRNA upstream 30947 50188692 ~ 50197647 (-) True AMCG00004465
AMCG00004467 mRNA upstream 52238 50209983 ~ 50225826 (-) True AMCG00004467
AMCG00004466 mRNA upstream 73529 50231274 ~ 50234343 (-) True AMCG00004466
AMCG00004470 mRNA upstream 124000 50281745 ~ 50285988 (-) True AMCG00004470
TU10293 other downstream 136016 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 195118 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2838121 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3257373 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3676276 46468125 ~ 46468434 (-) True G7882
TU10487 other upstream 513321 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 566122 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1795919 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 1907781 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 1910308 52068053 ~ 52071586 (-) True G8761

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016988 True 4069 mRNA 0.51 16 NC_007126.7 23208042 ~ 23265405 (+)
grasscarp (Ctenopharyngodon idella) CI01000072_03455112_03462887.mRNA True 2481 mRNA 0.54 12 CI01000072 3454671 ~ 3462887 (-)