RNA id: AMCG00004461


Basic Information

Item Value
RNA id AMCG00004461
length 849
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00004461
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50170076 ~ 50182056 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCCCGGGTTGTCAACGTCTCTCAGTCTTACGAGCGATCGGGATTTAATGGGACCTTTGCTTCGCTAggacccccctccccttcccttcccttccccccGACCGACCCCCTCACTCGATCCCGCTCGGGCGCTGTCCACTacggcgggggggggggtgtctttGCCCGGGCGAGGAGCAGCGAGGGCGGGTCACCCAGCCCCGGCGTCTGCAGCAGCGGCAGCACTCCCAGCATGGCCGGCAATCTGAAGAAAGGTGGGGGCTTGATCGGGATGATGAAGGACGCTTTCCAGCCCCACCATCACCACCTCCATGCGCATCACCAGCCGGGGGCGGTGGACAAGAAGACGGTGGAGAAATGCTGGAAACTGATGGACAAGGTGGTGCGGCTGTGCCAGAACCCCAAGCTGGCTCTGAAGAACAGCCCCCCCTACATCCTGGACCTTCTCCCAGACACCTACCAGCACCTGCGCACAATCCTGTCGCGCTACGAGGGCAAGATGGAGACGCTGGGTGAGAACGAGTATTTCCGCGTCTTCATGGAGAATCTCACCAAGAAGACCAAGCAGACCATCAGCCTCTTCAAGGAGGGCAAGGAGAGGATGTACGAGGAGAACTCGCAGCCCAGggaggaggaggctgaGAACCTACGCTCAGCTGAGaatgcactgaaacacaactgCAAAGTCTTGGAGATGTTTCTCCAGGACGATTTCAAATTTGGACATGGCTGCCATGCCGAGAGCGAAGTTCACACCGCCAGCATGACTCGCATTTCCGTTGAGGACACGCTATCATGCTCTGGGGACACGGGGGCTGTACTGCATGCAAACCCACAATGCAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10333 lncRNA downstream 34345 50127772 ~ 50135731 (-) True G8370
TU10312 lncRNA downstream 99275 50066484 ~ 50070801 (-) True AMCG00004457
TU10314 lncRNA downstream 100904 50066398 ~ 50069172 (-) False AMCG00004457
TU10303 lncRNA downstream 131721 50033396 ~ 50038355 (-) True G8350
TU10300 lncRNA downstream 150052 50019824 ~ 50020024 (-) True G8347
TU10376 lncRNA upstream 30136 50212192 ~ 50214639 (-) False AMCG00004467
TU10486 lncRNA upstream 486890 50668946 ~ 50674553 (-) True G8500
TU10492 lncRNA upstream 499574 50681630 ~ 50681962 (-) True G8505
TU10518 lncRNA upstream 512518 50694574 ~ 50694803 (-) True G8524
TU10539 lncRNA upstream 538387 50720443 ~ 50720925 (-) False AMCG00004480
AMCG00004460 mRNA downstream 12331 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004457 mRNA downstream 98135 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004456 mRNA downstream 122002 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004447 mRNA downstream 328556 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004445 mRNA downstream 336336 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004465 mRNA upstream 6636 50188692 ~ 50197647 (-) True AMCG00004465
AMCG00004467 mRNA upstream 27927 50209983 ~ 50225826 (-) True AMCG00004467
AMCG00004466 mRNA upstream 49218 50231274 ~ 50234343 (-) True AMCG00004466
AMCG00004470 mRNA upstream 99689 50281745 ~ 50285988 (-) True AMCG00004470
AMCG00004471 mRNA upstream 107886 50289942 ~ 50290739 (-) True AMCG00004471
TU10293 other downstream 161382 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 220484 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2863487 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3282739 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3701642 46468125 ~ 46468434 (-) True G7882
TU10487 other upstream 489010 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 541811 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1771608 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 1883470 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 1885997 52068053 ~ 52071586 (-) True G8761

Expression Profile