RNA id: AMCG00004465


Basic Information

Item Value
RNA id AMCG00004465
length 1497
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00004465
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50188692 ~ 50197647 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCTAGACTCAGTGCTTTTCTTTCCTGAGACCCACACACAAACTCCTGCACCCCTCTCAGAATGGCTCGGATCATGCCACTGTCATTAATTCTGCTCTGGTCTACTGTCACAGTCTTGGGCTGCGTTGCATGGGCACAGTGGGCGAGTGATGTTCTCACGGTGTTTGGCATATACGAGGGCTCGGTCAATCTGACGGCAAACATCAATGTCTTTGAGGAGGCGACGCTGGTGCAGTGGAGGGTGAAGAAGGGCCCAGAGAAGATCAGGATCGTGATGTACAACCCTCAGAGTGACTGGCCGCTTCCCCCGGTACTGGGACGGTACGAGAACCGCACCCTGTACTCAGACACCTTCCTTTGGATCAGCAACCTCAGCCTGCAAGACACGGGTGTGTACATTCTCCACGTCACTAACTGGGATGGCCACATAACTAAGAGAATAATCAACCTCATTGTGGAAGTGCCTGCTGCTGTGCCCCGCATTACATGTCAGATGTATAGCCTACCCCCAAATCCTGTCCTGAACCCACTGCTCCCTTGTACTGTCTCCGAGGGAGGGAGCATTTCCCTCTGCTGCTCAGCCTCCCAGGGGACCAACCTCCGATTCCATTGGTACAAAGATGGAGGCCCCCTCTTTCACACTGGGAACCTGTCCTTGGTCAACCTGAACAGATCGAACTGTGGGGAGTATACCTGTGTGGTCAGCAATGCTGTGAGCCGAGTGGAAACAGCCTTCAGTTTCTGGGATTTCTCCCTTTGTGCTTCAGAAAATAGATTTTGGAAAACGCAGAGTAATATTTTTGCCCCAATTGTGgcctttcttctctttctcctcaTTGTCATTGCTGTCATCGTCAGACGCAAGATGATGTGTCACAACGGGGATAAGAGTGCTACAGTACCAGCTGACACCATATATGAGCCAATGTATCCAAGTCTGAGGAGACCAGCTAAAGGCCAGCTTAGCCCACAACTGCAGGATCCAGTTTCAGTGGCAAGGAGAACTGACTCGCGCAGGACACCCATGGAAAACcgaaaacaagacaaacagctGGGGAGTTCggaaaaataattttgaatcaAAACATTGGAATGATGGAACTTTGTACATTTTAAGtctatttaattgtttttcttgctcAGTGACATCCTTTTTCTTAGCAGTGTGGCAcaaaggaaatgtaatgtatttttcctccAACAAACGTAACTTTAACTGATGCAGTTTAGATGGATTAAGTGATGAGAATATTCAGATTTTTATCTAGGTCAAAAAATGTGTCAAAGAGCCGGAAAGTAGTAATCAGTACAAATGTTAATTCTGGTAAACTTGTGGTTGAAAATACACAGTGGCTTTAGCTGGCCATCAGTTTGTAATTTGACAATTGTACTGCCCCTTGTTTGTTATTAACTTTCAGGTACTTTCCAAGTACCTAAATCAGTCTTTTTTACCTACtggcattttattgtttaaatataatatatccaTAATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10333 lncRNA downstream 52961 50127772 ~ 50135731 (-) True G8370
TU10312 lncRNA downstream 117891 50066484 ~ 50070801 (-) True AMCG00004457
TU10314 lncRNA downstream 119520 50066398 ~ 50069172 (-) False AMCG00004457
TU10303 lncRNA downstream 150337 50033396 ~ 50038355 (-) True G8350
TU10300 lncRNA downstream 168668 50019824 ~ 50020024 (-) True G8347
TU10376 lncRNA upstream 14545 50212192 ~ 50214639 (-) False AMCG00004467
TU10486 lncRNA upstream 471299 50668946 ~ 50674553 (-) True G8500
TU10492 lncRNA upstream 483983 50681630 ~ 50681962 (-) True G8505
TU10518 lncRNA upstream 496927 50694574 ~ 50694803 (-) True G8524
TU10539 lncRNA upstream 522796 50720443 ~ 50720925 (-) False AMCG00004480
AMCG00004461 mRNA downstream 6636 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004460 mRNA downstream 30947 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004457 mRNA downstream 116751 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004456 mRNA downstream 140618 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004447 mRNA downstream 347172 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004467 mRNA upstream 12336 50209983 ~ 50225826 (-) True AMCG00004467
AMCG00004466 mRNA upstream 33627 50231274 ~ 50234343 (-) True AMCG00004466
AMCG00004470 mRNA upstream 84098 50281745 ~ 50285988 (-) True AMCG00004470
AMCG00004471 mRNA upstream 92295 50289942 ~ 50290739 (-) True AMCG00004471
AMCG00004475 mRNA upstream 442539 50640186 ~ 50660336 (-) True AMCG00004475
TU10293 other downstream 179998 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 239100 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2882103 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3301355 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3720258 46468125 ~ 46468434 (-) True G7882
TU10487 other upstream 473419 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 526220 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1756017 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 1867879 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 1870406 52068053 ~ 52071586 (-) True G8761

Expression Profile