RNA id: AMCG00004467


Basic Information

Item Value
RNA id AMCG00004467
length 4856
RNA type mRNA
GC content 0.49
exon number 24
gene id AMCG00004467
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50209983 ~ 50225826 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTCAGTCATGTCACTCTGTCTCAATACAATTAATGAGTCTCTTCATCTAACAGCATTGCAGAATTGTAAGTAGACAGACTCCTATAGAGAATCAGTCCCACCAAGTATACTGATAGTGGCTGAAGAACTCTTCAATACAAGTCCAATTTGTTTAGCCAGATCCACATGAGCATGTGCTTTAAAAAGATAACGTCCACTTTCTGTGATCAAACCAggtcaaatgcattttccaGCTGTTTAGATCCTTCTTCATAGAAGTTGTCAGCCCAACCAAGGTTCAAGATGTAGTTGATATTTAGCTCTCCTGAAGATATGCATATTTTCCACAATGAGATCATCGGTCACCACCGCACATCGATCAAAAGTGATAGCAGCCTCCGGTCACTGTTCTTTGGACAGACAAAGCGCTTGCGCCTCGCTGGTGGACCTCCATGTGCATCCTAATTGGGGAGCTTTGCATACAATTGAACACGATATATCAATTAGATGACGGACATCTTGAAGGGGAGGGACACTAATCAGAGATTGGGGTGTATAGGCCACTGAATCTAACTTTAAGGTCTGTGGTAGAGGCGCTGTTGGAGGGGACGTAAAACACAACCAAACATGTTTCTACAGTTGCAGAACAGAGATAGTTTCCTTGACCTCCATCAGACGACTTGTCTTAATGACTGGGATATGAATGAAGAGATTAAGCTGGCCACAACTACAGACCAGTTTTATCAAGACGAGAAGCGGAATGACCAGTATCTGGTGCAGTGGCATTACGCCAGGTTTTCCAGACGCTCCTCTTCGGGGAAAGACGACTCTCCCTCCCAGTCTCCCTCTGAGATGGACGAGCCCCAGATACAGCCCAGTCTGTGGCTGGTGGTCAACCCATGTCTTGTCTGTCCCATCAAATACCCATGTCAGATGACCCAGGTGTCCCCCCCAGCAGTAACAACGTGGTCCCCCCTGACTCCCAGCCCTGCCCTCAGCCCCCTGCCCCCTCTAGAGGAGCCAAGCCTGGATGAGTCTCTGCTCTCGGGGTCTTCATCCAGCGAATTCATGTTCACAGATGATGATGACACCTCCTCTGTGGACGTCCCTGTTCCTCGTAAGCCCAAGACCACCCGCAAGCCCAAGGCCCCGAAGGAGAGGGGCCGTAAGCCCGGGCCGGCCCAGAGCAGACGCCTCGCCAGGGTCCTGCAAGAGAGTGGCAACCTGAACAAGGGAGGCTGGCCCCGCCCACCGGTCAACTACTGCATCCTCATTGCCATGGCGCTCAACAGCAGCCGCTGCGGCAGCCTCAACGTGCAGCAGATCTACAACTTCATGCGGCAGACCTCCTTCGCAGGGAAAGCGCATGTCTATGAGAAGACGcatcaaaacaaactgaaagccGTCCTGGGCAAATTCATGGACAAGGTGAAGGAGGCCCGCAGGACCCTCAGGAGCCCACAGGTGGAGAAGTTTGACTGCACTAAGCATGAGAGCAACTTCTGGTGCTACTGCTGTGGGGCGGAGGTGCagaaacacattacaaatggCAACCTGACAGTGCTGCATGGAGGGTTGTTGGAGCACATGGCCAGCCCTGAGCACAGAAAGAACACGAACAAGTTCTGGTGGGAGAATAAAGCAGACTCTAAACTGAAGGAGAAGTTTCTAGTCACAGAGGAGGAGACTGACAGGTTTAAAACAGAAGTGGCCAAAGCACTGGAAAactttgaagaaaaagaagatgaaTTCATAAAACAGCAAGCTGCCCGTATACGAACCCTGGAGCAGGAGAGACATGAAATCCTGCAGGCCCTTGTAGAGCCTGAGACAGAGCAGGAGCTGCCCAGTGGACTGGAGGAGCCCCACGTCAGCTCTGGAACCAGCTCCTTCTGCAGGACACGGGGACCGTCGGATGGACCAGACCTAATGGAGGACCCCGAATGGCCAGGCTTAGAAGAGAGCTTAACTTTCATTGGCTACCAGGATACTGCCAAGGGTGGGAACATCCATACAGGAGCTACACCGCCCTGGTTGCAGGCCGACCCGCAGGAGGGGCCGGCTGCTGGCATGGCACAAGAGATCGGCCCGTCTCACACCGAGTTCCTCAAACACAAGGAGCAGGAGAAGTTGCGGAAGCTGCCCGCTAATCGCGTGGGGGCAAATTTCGACCACAGCTCTCAGACCGACGCCAGCTGGCTACCCTCGTTTGGCAGGGTGTGGAACAGTGGCCGGAGGTGGCAGTCGAGGCACCAGTTCCGGGTGGAGGAAGGGCAGATGAACCAGAAGAGAAAAAGGGGCGGCGGGGGCAAAGGGAGTAAGAAACCACGTCTCCAAGACCCAGAATAACCACTCCTGGCAGCGGTCCGATTAACCCTCAAGCCAAGTGCAATGTATAGAAATGATGTAAATAATGAACTGCTTTGATAATAAAACGCATGTTTACGTTGGTCAAACTCGAATCCAGGATTAACAAGAATCCCGTAACCATTTAGGAATGTTTCCCTGCAGTAACTGCATCTCTTATGTGGAAGTGTATTGTATTCCATTTTAAAACTTAACACTTTAATTAGAACTTAAAGACTGTCCTGTTTCATAAATTCTAACCTGCATTTCAATTATGCTGCACTCAGTGAAAACCTCTAATATGAACATAATGGTCATTAGTGGGAATAGTGACATTAGAGGCAGAATAATGGGTTTGAAAGTTAGATTAACTTTCCTAGGTATTTGAAAACAGCTTGGAACAGTTAAAATAGTACTACCTCCACAATGCATttacccatttaaaaaaataaatacatactttctAGTCCAGAGGAACACATTTTCCATTGAGCATGATAATCTTAGTCACAGATCTGTTTAATGAGATGATTTAATGCTGATTTAGGACAACCCCATAGACCAGGTATCCCTCCACCGATTCATGCAAGAAATCTGCACTCAATACAACCCATCCATTCCAATGTCCTGAATCGGACTCAAAAGTAAATCCACAAATCACAagtgttcttttcatttttttattgtatattttacaatCCCAACAAAATCTTCACAGGCCTCCTTGATGCATaatctgTTTATGCCTCCTTCTCATCTCCAGGAGCATCACCACCCTTGGTGTTTCTCGTGTAGATGACCTGCGCTCTGTGTTTCGAAACGAGCTTGATCATCCCTTGAGAGACAGTTCCTGGAGAGCAGCCCTGGCCAGAGAGCCTCTGATCTTCAGCCTCTCGGAGACCACAGCAGGTGTGATGAGTTTGTAGTTGGGCACCTCCTTGTACAGCTTGTCATAGGTGGCCTTGTCGAAGAGGACCAGGTTGTTGAGCTTGTCCCTCACCTTCCCTTTGGACCACTTCTACTCAAGGCCTTGCCTCCAGACTTATTAACGGGGTCCTTGTCCTTCTTTGAGGACTTTCCCgaatctttctttttcttatcgTCCTTCGGAGGCATGATGCTGCAGCGTCAAGATGTCggacagaaaggaagaaagccCTTGCGCGAACCCCTTAGAAGCCCCGCACATCCGTGAAACGCGGAAGTTTAACAGGCGGACCCGAGGGgtttctgggaaatgtagtgctTTACTGTAGAGCAACGCCCTTTCCGGCAGAGACGTAATGCAGTGAGCTGGGGAGGAGCGTCCGTGTAAACATGGCGATTTTCAGTGTTTACGTCGTAAATAAAGCCGGTGGATTAATCTACCAATATGACAACTACGTGCCCCGTGCAGAGGCCGAAAAGACTTTCAGCTACCCCTTGGATCTGGTCCTGAAGACCCACGATGAAAGGGTGATCGTTTCCTTTGGCCAGCGGGACGGGATCCGAGTGGGCCATGCCGTGCTCTCCATTAACGGCGTGGATGTCAACGGGAGGTACACGGGAGACGGGAAGGAGATCATCGAGTACCTGAAGGATCCGGCCAACTACCCCGTCTCTATCCGGTTCGGCCGGGCACGACTGAGCTCCAATGAGAAACTGATGCTGGCCTCCATGTTTCACTCGCTGTTTGCCATCGGCTCCCAGTTGTCGCCCGAGGTGGGAAGCTCTGGGATTGAAATGCTGGAGACTGACACGTTTAAACTGCACTGCTTCCAGACGCTCACAGGTATAAAGTTCATAGTGCTGGCAGACCCTCGACAGGCTGGGATTGATGCTCTGCTGCGAAAGATCTACGAGATCTATTCTGACTTCGCTCTCAAAAACCCCTTTTACTCTCTGGAGATGCCCATCCGGTGTGAGCTCTTTGACCAGAATCTGAAGGCTTCCCTTGAGGTTGCAGAGAAAGCGGGGACGTTTGGCCCAGGGTCGTGATCAAGTGTGGGGCTGAGAGCAGGTGCAGTGAGCCAGCGGGATCCCGTTTCTGGGGTTTTGTGTGAAGCAATTCTCAACTCTGTATGAAGAAAACCACTTGGGCTGATTTGTGGATATGGGGTGAAAAGCTGCAGCCTGCCTCACTGGAGATAATTTAAAGTCttatccttttaaaatacaagaaaatatgaTATCCTAAAGAGTcctattaaattaaacttaatcGTCCAAAGTGATCTTGGGCTTTGTAAAACTaaatttttgtgtgtgtgtgaactaaAACCATACCTGATATCTGCCTCCATCAACCTAAACTCTTTTGTGGTCTTCACACTGCattgtaaatatgaatgtgcAAGTTCCCTTGAATACGaatctgtaaataatgtataaataaagtaccTAGAAGTAATTTGCCTTGTCTAATCATGTGATGTTCTACAGCTGCTACATACAGCCTTTCCATTGACTGTCATTAGCTTTGTGTAGTGGGTTCTGTTAACACCGCAAAAACTGCTCCTACAATAaatctgatttgtatttatgtgttgc

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0005801 cis-Golgi network cellular_component

KEGG:

id description
K20303 TRAPPC4, TRS23; trafficking protein particle complex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10333 lncRNA downstream 74252 50127772 ~ 50135731 (-) True G8370
TU10312 lncRNA downstream 139182 50066484 ~ 50070801 (-) True AMCG00004457
TU10314 lncRNA downstream 140811 50066398 ~ 50069172 (-) False AMCG00004457
TU10303 lncRNA downstream 171628 50033396 ~ 50038355 (-) True G8350
TU10300 lncRNA downstream 189959 50019824 ~ 50020024 (-) True G8347
TU10486 lncRNA upstream 443120 50668946 ~ 50674553 (-) True G8500
TU10492 lncRNA upstream 455804 50681630 ~ 50681962 (-) True G8505
TU10518 lncRNA upstream 468748 50694574 ~ 50694803 (-) True G8524
TU10539 lncRNA upstream 494617 50720443 ~ 50720925 (-) False AMCG00004480
TU10540 lncRNA upstream 495353 50721179 ~ 50722312 (-) True G8541
AMCG00004465 mRNA downstream 12336 50188692 ~ 50197647 (-) True AMCG00004465
AMCG00004461 mRNA downstream 27927 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004460 mRNA downstream 52238 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004457 mRNA downstream 138042 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004456 mRNA downstream 161909 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004466 mRNA upstream 5448 50231274 ~ 50234343 (-) True AMCG00004466
AMCG00004470 mRNA upstream 55919 50281745 ~ 50285988 (-) True AMCG00004470
AMCG00004471 mRNA upstream 64116 50289942 ~ 50290739 (-) True AMCG00004471
AMCG00004475 mRNA upstream 414360 50640186 ~ 50660336 (-) True AMCG00004475
AMCG00004480 mRNA upstream 485013 50710839 ~ 50720588 (-) True AMCG00004480
TU10293 other downstream 201289 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 260391 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2903394 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3322646 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3741549 46468125 ~ 46468434 (-) True G7882
TU10487 other upstream 445240 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 498041 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1727838 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 1839700 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 1842227 52068053 ~ 52071586 (-) True G8761

Expression Profile