RNA id: TU10376


Basic Information

Item Value
RNA id TU10376
length 1888
lncRNA type sense_over
GC content 0.43
exon number 2
gene id AMCG00004467
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50209983 ~ 50225826 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCATGCAAGAAATCTGCACTCAATACAACCCATCCATTCCAATGTCCTGAATCGGACTCAAAAGTAAATCCACAAATCACAagtgttcttttcatttttttattgtatattttacaatCCCAACAAAATCTTCACAGGCCTCCTTGATGCATaatctgtaaagaaaaacaaattggtttaatgaaaatatgcatTCACATCTGCAAATACAAAGCCTGTCCAGCCATGAGACCAGGACAGCTCCAGTTCTGGAACTGAACAACGAACACAACTCAAGACCACTGTTTCACTGTTCACAGATTTTAGATCAATGAGACCTGACCTGGTTAGGAGCATAATCTGATGTATAAAAgtagaacaaatatatatttcaccaaaTATAACCTAGTCTAGTGTAGTATGCACAGTACCTATCCACTAAATACAAAACCACTTTCATAAACCAGTCATTTTCTCTGAGCCGGAGTCCACCACACTGGACTAAGGCAAAGCCGAAGCAACCAGATGAGGGTGACGGGGGAAAAGCTGCTCACCTGTTTATGCCTCCTTCTCATCTCCAGGAGCATCACCACCCTTGGTGTTTCTCGTGTAGATGACCTGCGCTCTGTGTTTCGAAACGAGCTTGATCATCCCTTGAGAGACAGAAAAGGACAATTAGCTGCCGAAGACAAAAGCAGGCCTTATTATGTACATCTGTGGACTGGACAGTGAGTAGATAGCATCTCATCTTCCCTGGTCCTACAACATCCCTTTGAAATTAACACCTTTCCAACCCACTAAGTTATGGCAGCTCCCATAGGGCTGGCCTGATCATCTCTGCCCTACAAAAGCAGATACCTGGTATTCAAGGACTGCAGGACAGTGACTGACCTTTGTTGAGCAGTTCCTGGAGAGCAGCCCTGGCCAGAGAGCCTCTGATCTTCAGCCTCTCGGAGACCACAGCAGGTGTGATGAGTTTGTAGTTGGGCACCTCCTTGTACAGCTTGTCATAGGTGGCCTTGTCGAAGAGGACCAGGTTGTTGAGCTTGTCCCTCACCTTCCCTTTGGACCACTTCTCTTCTTGGCCTTGCCTCCAGACTTATTAACGGGGTCCTTGTCCTTCTTTGAGGACTTTCCCgaatctttctttttcttatcgTCCTTCGGAGGCTGCGTGTAGGAGAATTAAAAACAGTTACAGTAGTTGTTCATGGAAAGAATCAATGTACACAAAaccatgtaaaaataaatatgggaATAGACTAAatgattaacaattaaataaaaaagatcgtggtttaaatgcatttaaaatggtcGTTCTCCAGTTTTGAACGTGGATCGGATCTGTTAATATTACCGGTAATAGTACTGGCAGTGTATTGTAAGCATTTGAACATAGAACATTAACCACAAGTCGggaatgtatatataattcagGTTTTAGGATTAAGTAATAATGGTCCCCCCTGCCAAACACTACGTGCTTGTCAAAATATGtgggttttattattaacaattctGTGGGACAACAAAAGCTATATCCTATTATAACGTAAAGTTGATGcacaaatattaatatcaaGTAAAACTGATGCTGTATACAAGTCGACAGTGTAGGCCTCGCAGCACGTTGCAATACTGTGAAGGGCTGCACCATGGGAGCAATGTGCCTGGACGCTAAGGACgtaaaaatataagaaaatgcAGCCCTTTCCGAGCCCCTTTCCACGAATCTGCAAGGTCAAGACACCTGCCCACACCCCGGTGGAGAAATAAAAAGTCTCCACAAGCgactatgtttattttttccctaaaaACCTCGGACAGTCTGCTCACCATGATGCTGCAGCGTCAAGATGTCggacagaaaggaagaaagccCTTGCGCGAACCCCTTAGAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10333 lncRNA downstream 76461 50127772 ~ 50135731 (-) True G8370
TU10312 lncRNA downstream 141391 50066484 ~ 50070801 (-) True AMCG00004457
TU10314 lncRNA downstream 143020 50066398 ~ 50069172 (-) False AMCG00004457
TU10303 lncRNA downstream 173837 50033396 ~ 50038355 (-) True G8350
TU10300 lncRNA downstream 192168 50019824 ~ 50020024 (-) True G8347
TU10486 lncRNA upstream 454307 50668946 ~ 50674553 (-) True G8500
TU10492 lncRNA upstream 466991 50681630 ~ 50681962 (-) True G8505
TU10518 lncRNA upstream 479935 50694574 ~ 50694803 (-) True G8524
TU10539 lncRNA upstream 505804 50720443 ~ 50720925 (-) False AMCG00004480
TU10540 lncRNA upstream 506540 50721179 ~ 50722312 (-) True G8541
AMCG00004465 mRNA downstream 14545 50188692 ~ 50197647 (-) True AMCG00004465
AMCG00004461 mRNA downstream 30136 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004460 mRNA downstream 54447 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004457 mRNA downstream 140251 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004456 mRNA downstream 164118 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004466 mRNA upstream 16635 50231274 ~ 50234343 (-) True AMCG00004466
AMCG00004470 mRNA upstream 67106 50281745 ~ 50285988 (-) True AMCG00004470
AMCG00004471 mRNA upstream 75303 50289942 ~ 50290739 (-) True AMCG00004471
AMCG00004475 mRNA upstream 425547 50640186 ~ 50660336 (-) True AMCG00004475
AMCG00004480 mRNA upstream 496200 50710839 ~ 50720588 (-) True AMCG00004480
TU10293 other downstream 203498 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 262600 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2905603 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3324855 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3743758 46468125 ~ 46468434 (-) True G7882
TU10487 other upstream 456427 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 509228 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1739025 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 1850887 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 1853414 52068053 ~ 52071586 (-) True G8761

Expression Profile