RNA id: TU10795


Basic Information

Item Value
RNA id TU10795
length 627
RNA type TUCP
GC content 0.48
exon number 3
gene id AMCG00004505
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 51942693 ~ 51954532 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCATTTTCAATTTGGTTAACGGACAATAAGCActgcctttttttccttctcatgTGTAAATACAATGCTaatgtttgtgttaattataACAAAATGGCGACCACAAAACAATCGTGACAATATGGTGAAGTTGTATTAATCCTGGTCTTCAGCGGGTCTCCGATTCCTGAATCCTAACACAGCCTCGGTCGATGTCTCTCGTGTTGGTTGTAGATGCTCCCACGAACCAAACGCTGTATCACCGTTCATCTGATCAGGATAAGCCCCGGGTCCTGTCCAGACGTAGGATCTACACCCCCCCAGGGTCCTACCTGGAGCTGCAGTGTGTGGTGGAGAGCCAACCGGAGTCCGTGGTCAAGTGGTTAAACCCCGGGGGCACCATGCTGTCAAATGCATCCAACAGCAATGCGACCCTCACCCTGAACCCGGTGCAGGAGAGGGATGAGGGGATGTACGAGTGCAGCGCCACCAATGACTACGGGTCCGAAAAAATGAAAATCCGCATCGACGTCAACCCAGAAAGTACTCTTGCGGTTAGATTGGTCACATACCCATTGTTTGTGATAATTGTGTCATCTTTACTGCTCTACAGCAGATTTTGCAAAGATCATTTCCAGTCCATCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10745 lncRNA downstream 73508 51846912 ~ 51880156 (-) True G8707
TU10621 lncRNA downstream 942521 51010818 ~ 51011143 (-) True G8601
TU10563 lncRNA downstream 1196938 50755393 ~ 50756726 (-) True G8552
TU10560 lncRNA downstream 1200940 50749018 ~ 50752724 (-) True G8550
TU10549 lncRNA downstream 1217066 50730963 ~ 50736598 (-) True AMCG00004481
TU10832 lncRNA upstream 104204 52058736 ~ 52059501 (-) True G8758
TU10833 lncRNA upstream 108872 52063404 ~ 52065450 (-) True G8759
TU10840 lncRNA upstream 136337 52090869 ~ 52091247 (-) True G8765
TU10845 lncRNA upstream 162348 52116880 ~ 52163082 (-) True G8769
TU10852 lncRNA upstream 213808 52168340 ~ 52168541 (-) True G8776
AMCG00004502 mRNA downstream 34765 51870043 ~ 51918899 (-) True AMCG00004502
AMCG00004503 mRNA downstream 85126 51856858 ~ 51868538 (-) True AMCG00004503
AMCG00004497 mRNA downstream 121325 51817211 ~ 51832339 (-) True AMCG00004497
AMCG00004493 mRNA downstream 426069 51520856 ~ 51527595 (-) True AMCG00004493
AMCG00004491 mRNA downstream 444836 51504468 ~ 51508828 (-) True AMCG00004491
AMCG00004517 mRNA upstream 258098 52212630 ~ 52222193 (-) True AMCG00004517
AMCG00004519 mRNA upstream 273088 52227620 ~ 52232504 (-) True AMCG00004519
AMCG00004518 mRNA upstream 282682 52237214 ~ 52240865 (-) True AMCG00004518
AMCG00004521 mRNA upstream 300311 52254843 ~ 52296244 (-) True AMCG00004521
AMCG00004522 mRNA upstream 363099 52317631 ~ 52336606 (-) True AMCG00004522
TU10541 other downstream 1228311 50723867 ~ 50725353 (-) True G8542
TU10487 other downstream 1280289 50671066 ~ 50673375 (-) True G8501
TU10293 other downstream 1944970 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 2004072 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 4647075 47059896 ~ 47306589 (-) False AMCG00004403
TU10834 other upstream 110994 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 113521 52068053 ~ 52071586 (-) True G8761
TU11033 other upstream 904510 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 904510 52859042 ~ 52860438 (-) False AMCG00004529
TU11035 other upstream 904510 52859042 ~ 52871546 (-) False AMCG00004529

Expression Profile