RNA id: AMCG00004518


Basic Information

Item Value
RNA id AMCG00004518
length 2477
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00004518
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52237214 ~ 52240865 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGTGACCTTGCGTTGAGTTGTCTGTGTACAGACGCCAAAGCAATGgccaattatgtattttgtgcgCTTCTTTTGGCTTTTGCCCATGCAGCAGTAGATCCACTGTCTGATCTCTTTGGGCCGGTAGCCCCCCATAAAGGTTTTGTTCTGCGATTCAATGATAACTCTGTAGTTCCTTCGGGTCTGAGTTTGGGTCATTCGACGACTGACTCGGTCGCTGTTGACTGTGGTCCCCAAGAAATTGAGGTGGCGGTCAATCGGGATCTCTTTGGAACCGGGCACCTGGTCAGTCCTGCGGATCTCACTCTGGGCGGCTGCCCAGTCACTCGCCAGATGGGCGGTACTCAGATGCTGCTGTTTGTGGCTCAGCTGCAGGATTGCCGGAGCCAACTGACGATGACTGCAGACACGTTGACATACCACTTCTCCATACTCTACAAAGCCAGCCGTCTTGGGAACTCGCCCATCGTGAGAACCGATGACGCCACCATTGGCATCCGTTGCAGCTATGAAAGGCTACACAATGTGAGCAGCAATGCCCTTAAGCCAACATGGGCTCCTTACACCTCCACCAAGTCCTCTGAGGACATCTTGCAGTTCTCCCTGAGACTCATGACTGATGACTGGCGTTCCCAGAGGCCCACTCCTGTGTATCAGCTCGGTGAGGTGCTCCACATCGAAGCCTCGGTGCTGCAGGCTGGCCACCTGCCACTGTGGCTCTTTGTGGACAGCTGTGTGGCCACGCTAGTTCCTGATCCATCCTCTAATCCCAGATATGCCTTCATTGGGAACAGAGGGTGTCTGATGGACAGCCGAGTGACTGGCTCGGACTCAGTCTTTGTGTCTCCTAGAGCTGAGCACAGCAAGCTGCAGCTCCAGCTGGATGCCTTTAGGTTCCAGGGGGACTCCAGGAGCTCTATCTACATCACCTGCCACTTGAAAGGAATTCCTGCCTCCCAGAATCCTGACACTCGCAACAAGGCTTGTTTCTTCAATCAGGGGAACAAGAGATGGGTGTCAGTGGATGGGAGTCCTCAGTTGTGCCGCTGCTGTGAGTCTGCGGACTGTGAGGCGATGGCACGCTCGGGCTGGCGAGGCAGGAGAGATGTGGCTGGCTTGGGATACCAAACCTGGGAAGCTGATGCTGTGCTCGGTCCAATTCTCATTGTTGGTGGAGAGGAGACCCTCTTGCCTGAAGAGTTTGTGGCTTCTGTACTGATGACGACTGAGGATGAAGAATTAAAAGACGTCTCTGCAATGACTCTGATTCTGCTTGGTGTGGGGACTGCAGTGGGACTGGTTGGCATCATCGTCCTGGCCTCCATTCTGTGCACTAgcaaatctaaaatgtaaagtgggggggggggggtctatAATCCTTTTAAAACCCATATATCgtatacattttctaaactCGTGCCGGTTTCAAAATTTGGGTCTAAGGAGGTGGATTTCTGCACCCGATGGAGAATGTGGTTTCTTTCACAAGACCCACCTAAAGGGTGTGAGGCTATAGAAAGCACTTTATGCCGTGCTTCTCGGCTACACCGGTTTTGTCCTCTTGCATTTAACTGACGTTGGGGACGTACACTAGTCAAACTACTACTGCAGGctgtttttaaagtaatctGGACCAAGTGTCGGAGCCTTTTAATTGTGAACAGTTTTGAGTATTGAGGTACTTTCATATTAACGGCACTCTGATACTGAAGTCTTGCTCATTAGTGATTGAGTGAGATCCTTCCAAGCCCTACCACTTGTTCATTTAGTTGCCGTTTGGTGCATCGGCCACTATCAAATGCAAGACTGCTCTCTGGTATGATTTGCACTTGTTTACATCGGTGTTGATAAgcaaaaaataatggaaatgttaAGAACCAGTTCTGTAATGAGCAGTGATATTCAAGGTAAGGTTgatgcttttgtatttgtactgggTGTACAAATGACTAATTAAACTGCAAGAGAAGTTGAGAGTTTAGATTTCCCTTTTAATTGATAgatatttaaacagtttttataaTAAAGGCAAATAtcactttgctttgtttttgttgaaccATGTGTTGACCTGACTCCACCTTCGATTGGCTGTCAGAGTTCAGCTAAGTACACCCGACTACAGATTGGCTGAGTCATAGATTTAGACAATATTGGTCTGCTGTGTATGGTTTCACACCAACACTtatttgtgtgaaaacaaatgtctggAAACTAATTGTATTGTGTGCACTAAAACCAGAATGATGTAGATGTCAATACTGCAATAAAGTAAATACTCCTTTTTCATATCTTCTGActtttcttcacttcagtgGCTTTCTATGTAGTAATATGCCAAAGCTGATATTAACCCAAAGAAATTATGTAGTTTTAATAATAGATTCAATGTGATGGGTATTGGGTGTctggttattttaagtaaatgtataacttttcaATTAAGCCATTAAAACCTGCATGCTTACAGCaat

Function

GO: NA

KEGG:

id description
K19928 ZP3; zona pellucida sperm-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10876 lncRNA downstream 33534 52203194 ~ 52203680 (-) True G8795
TU10852 lncRNA downstream 68673 52168340 ~ 52168541 (-) True G8776
TU10845 lncRNA downstream 74132 52116880 ~ 52163082 (-) True G8769
TU10840 lncRNA downstream 145967 52090869 ~ 52091247 (-) True G8765
TU10833 lncRNA downstream 171764 52063404 ~ 52065450 (-) True G8759
TU10916 lncRNA upstream 128374 52369239 ~ 52369463 (-) True G8829
TU10920 lncRNA upstream 313054 52553919 ~ 52554373 (-) True G8833
TU11032 lncRNA upstream 615841 52856706 ~ 52858452 (-) False AMCG00004529
TU11031 lncRNA upstream 616896 52857761 ~ 52859035 (-) False AMCG00004529
TU11107 lncRNA upstream 861036 53101901 ~ 53104836 (-) True G8981
AMCG00004519 mRNA downstream 4710 52227620 ~ 52232504 (-) True AMCG00004519
AMCG00004517 mRNA downstream 15021 52212630 ~ 52222193 (-) True AMCG00004517
AMCG00004505 mRNA downstream 282874 51942693 ~ 51954340 (-) False AMCG00004505
AMCG00004502 mRNA downstream 318315 51870043 ~ 51918899 (-) True AMCG00004502
AMCG00004503 mRNA downstream 368676 51856858 ~ 51868538 (-) True AMCG00004503
AMCG00004521 mRNA upstream 13978 52254843 ~ 52296244 (-) True AMCG00004521
AMCG00004522 mRNA upstream 76766 52317631 ~ 52336606 (-) True AMCG00004522
AMCG00004523 mRNA upstream 112507 52353372 ~ 52399171 (-) True AMCG00004523
AMCG00004524 mRNA upstream 382541 52623406 ~ 52665227 (-) True AMCG00004524
AMCG00004525 mRNA upstream 485920 52726785 ~ 52733805 (-) True AMCG00004525
TU10836 other downstream 165628 52068053 ~ 52071586 (-) True G8761
TU10834 other downstream 171332 52065526 ~ 52065882 (-) True G8760
TU10795 other downstream 282682 51953664 ~ 51954532 (-) True AMCG00004505
TU10541 other downstream 1511861 50723867 ~ 50725353 (-) True G8542
TU10487 other downstream 1563839 50671066 ~ 50673375 (-) True G8501
TU11033 other upstream 618177 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 618177 52859042 ~ 52860438 (-) False AMCG00004529
TU11035 other upstream 618177 52859042 ~ 52871546 (-) False AMCG00004529
TU11026 other upstream 658695 52899560 ~ 52911752 (-) False AMCG00004533
TU11054 other upstream 705947 52946812 ~ 52951387 (-) True G8937

Expression Profile