RNA id: AMCG00004521


Basic Information

Item Value
RNA id AMCG00004521
length 9105
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00004521
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52254843 ~ 52296244 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGATCGGccagtggaggaggagggacTGTCCATGGAGAAGAAGCTGCACACACTCAACGTTTCCGACACCCTCTTCAACACCACACTTGTCATCACCACAATTTTAGAGAACCCCTACGTGATGCTGCGGAGGAACCACCAGGAGCTCGACGGCAACGAGCGTTACGAGGGCTTCTGTGTGGATATGCTGCATGAGCTGGCCGAGATCCTCAAGTTCAACTACAAGATCCGGCTGGTGGGGGACGGCCTGTACGGCGTGCCCGAGACCAACGGCAGCTGGACCGGCATGGTGGGGGAGCTCATTTCCAGGAAAGCGGACCTAGCTGTGGCTGGACTGACCATCACtgcggagagagagaaggtCATTGACTTCTCCAAGCCATTCATGACACTGGGCATCAGCATCATGTACAGAGTGCACTTGGGCCGCAGACCAGGCTACTTCTCCTTCCTGGACCCCTTCTCTCCGGGCGTGTGGCTGTTCATGCTGTTGGCCTATCTGGCTGTGAGCTGCGTGCTGTTTCTGGTGGCCAGATTGACCCCATACGAGTGGTACAACCCCCACCCCTGCATGAAGGGGCGCTGTAACCTGCTGATTAACCAGTACTCCCTGGGCAACAGCTTCTGGTTCCCAGTGGGCGGCTTCATGCAGCAGGGCTCCACCATCGCCCCCCGTGCCCTGTCCACCCGTTGTGTCAGTGGAGTCTGGTGGGCCTTCACTCTCATCATCATCTCCTCCTACACTGCCAACCTGGCCGCCTTCCTCACCGTCCAGAGGATGGAGGTGCCCATCGAGTCTGTGGACGACCTGGCCGATCAGACAGCCATTGAGTATGGCACCATGCACGGGGGCTCCACCATGACCTTCTTCCAGAACTCGCGCTACCAGACGTACCAGCGCATGTGGAACTTCATGCACTCCAAGATGCCCAGTGTGTTTGTGAAGAGCACGGAGGAGGGCATCGCGCGGGTGCTCAACTCCAACTATGCCTACCTGCTGGAGAGCACCATGAACGAGTACTACCGGCAGCGCAACTGCAACCTGACCCAGATCGGCGGGCTGCTCGACACCAAGGGCTACGGCATCGGGATGCCCGTGGGCTCGGTGTATCGAGATGAGTTCGACCTGGCCATCCTCAAGCTACAAGAGGAGAATCGCTTGGAGATCTTGAAGAGAAAGTGGTGGGAAGGAGGCCAGTGCCCCAAGGAGGAGGACCACCGAGCCAAAGGGCTGGGCATGGAGAACATCGGCGGGATCTTCGTGGTGCTGGTGTGCGGGCTGCTGGTGGCGATCTTCATGGCCGTGCTGGAGTTCATCTGGATGCTGCGCCACACGTCCGGCACAGAGctgtCGGTGTGTGAGGAGATGTTCCAGGAGCTGCGCGGGATCGTGCTGTGCCAGGACAGCCTGCAGCTGCGGCGCAAGCGGGGAGCGGGCGTCCTGCGCACCCGGCCGCTGCCCCTGGAGGAGCGCAGAGCTCGGATGGCCGCCGCCAGCCTCAGCAACGGCAAGCTGTGTGGGGGCAGCGGCGCCCCCGAGCCCCTGGCCCACAGACTGGCGCAGGAGGCGGCCCTGGTGGCGAGGGGCTGCACCCACATCCGAGTGTGCCCGGAGTGCCGCCGCTTCCAGGGCCTGAGGGCGAGGCCGCCAGGGGCCGCGGGGGGGTCCCCGGTGCACAGCGAGGAGAGCCTGGAGTGGGAGAAGACCACCAACAGCAGCGAACCTGAGTAGAACCCCACCCTTTGCCCCGTTTTCCCTCTCGCCGCCCGCCGTGGAAGTTGAATGGGATTGTGGGATTCTGCAAGTACACAGGGGGCAGGGTTGGGTGGCCGTCTTCAAATCCTACTGCATTCAGATCCTCTTCTGCCGAGAGGAGAAGTCAGGAGCCTGGAAGGTCACAGGGGCTCTGAGGGGAATCCTGCCCCGCTCACACAGTCTGGCTTTGGTGGGAGTCAATTCAACATGGACGcgcagtgctctctctctctctctctctctctcgccctgtctctcactgtctctcactctctctctctttctctcgccctctatctctctcgctctttctctctctctctcacacgtgCACACAGCCTGTCCGGCATCTTTCAAGACTCCCGAATGCCCGAATTCTTTTGGATGAACAGCAGACAGTCACCCGTACTATGCAGTCCTTTTTTGGGGGCTTTTCTCCaatgattttctcttttttttatgtcattGTAGCATTTGaagtttttccttttaaattatttgatttgactttatttattttttggtcatttgttttttttcttatcctCATTCGGGATTCAGGTTGAGAACTGtggatatttttcttctttttttcgcCCCCTCGAGATCGAGAGCCTTTCTGAACTGCAAGACTTTTGTGGGGACAGTAAGACGAATACGATCAACAAAAAAGTGCCAAATAAATGCGGAGGACTCTGTGTTAGGGATCGCTGGGCCGTGGGGGGCTCCATCGAGAGGGGCAGGGCTGGCACACTCCCGCACGGCCTGGGCACGGGTTTGTCCTGGATGAGCAGAACATGAAAAACTGTTACgtcatgacttttttttttaagaaaaaataataatggaattaaaaaacacaaaaaaaggttttaaatgtattttttgaaagACAACAATGCACATGAGAACAACGGAAGCAGGGGGGGTGGGTGTATTTACCTTCTTTTCTAAAGTCTGCCCAAGCATTGTATACAGCCTGAAAAATCCTGTTCCCTAAAAAAGAAACGAATCTGATTTTACCCACCATTTAAATCCCAGAAATATCTATTCAATTAAGGTCCTATCATCTCTGGAAACAATTGTGCTTTTACTGTCTATATTTTAAGTACAAGACCAACCCCTATGATATAAAGAAAGATTGGTTAGGGGTGTTTGATTGAGAGAAATTCAAAATCATATCCACTAACAATGAACTGAAAGGTAAATTCTAGATTCTGTCATGGGGCATTTTCCCAAGCAGCGCATTAGTATGTAAACTACTATTGCCCCAGTTAAATAAGGGTCAACCTGTGctagaaaagcaaaataaactcCTTTAATCTCCTTTAATCAGTAATCGTGTTTAACAGGTTTTCAAAATCCCTACATTGTCTGAGTGCTGATTTTTACAATTGCTCAAACAGATCTCTCAGGCACTGTCAGACAGagtttgcagtgtgtgtgcagatggtatgtttttgtttgtgtgtttctttgttttttatgtcaAAGGTGCTGCTTTCTAATGTCCGAACCCGATAGCTTATTCTTCATAATGCCTTAGAGCAGGGGTGTCCAAATCTGGTCCTTGAAAGCCACCATTCATCAGGTTTTATAGCTCACCATAAAATCATCAAGGTATAGGCGTTTTGTTAAGGATCTGTAAAGCagagtgtgtttttgtgaaattCTGGGATTTGGAGACaccgtgaccctgtactggatgtgCCAGTTATTGAACATGGATGGGTGGCGGGATGTCATTTGGAGATCGTCTGGAACAAAAGCCTGAGCATCCTTCAGTCCCCCAAGGATCTGGATTGCCCCTAATTAAACAAGTTACCTGCTTGATTAATCAATAGCTAAGGGGGTTTGCCAGCCCTTGGGAACTGGTGATCTACAAAACTGACTGATAGAAGTTATGAGGACCAGAGCTAGACAGCCCTGCCTTAGAACGTGTGAGTCAGTATGTGAAGAAATACATTCGATCCCGGTGTTTCCCCACAGCTTCTTCTCTTCGCCACACTTTAATCTGGAAAGCGCTGTATGTAGGGGAAATGTTCCTATCATTGTCTCGATGAGTAAACCAGAAAACTGTCGTGCATCATTGACAGATGAGCAGTCCGAGAAAactgaattactctgtgttgcAATTTCATCTCATCTCCTGGGATGACTCCTGTTGTGAATAGagtcctgtgtgtttttttgttgttatttctttCCTCTCGGTGCTGATTCATACGGTCACTTCCTGCCCTTCATTTCTGATGCCAAACATGAGAACATCCAGCCATGCCGATTCAGAgaagtgtttctttttattaaacagatgatgataataaacACGTTTTCAAAAAGCATATCGGCGTCAGCGTTAGATCTCGGCGTGAAAAGTCCAGCGGCGTTTTTGTTCTCTGGTTGTGTTATGTGATTGAAATGGCTGGAGTTGAACTCGGGTGACCCTTAGAGTGAATGCAAACTGACAGATTCCTCTTAGTGAGGATTACCAAGTCTGGTTCACCACAAGGTTACACACAGCCCGTTGTGCGAAGGCTATAATGATGTGTAAGCTTGCCTTAGCCAGCAGGATTTGGCTGACGTTTTTTGTTGTCACTGTTTCTGTTGTGTATTGAACTTCAGAACATCGTGAAAGGGAAACAGACGGGCACAGAACGGCCTATGTAGTGTTTTCTTTAAAGGGAGCCTGTGAGGTCGGTTCTGTGTGGTGGGGTGAGGGCAGAGCTGATGCATCTGTGTTTATGCCCGATAGAGTTAAATCGAGCCCCATCCAGACTGCCTCATAACAGCCAGATAGAAATGCCaactatcaatcaatcaatcagtctttCAGTCAGTCGGTCGTTGGCAGCCCCCCTTTCTTCTCTCCGACAGCAGCAGCGGAGGGCAGAGGGATGGAGCGCGGAGCTGTGGGGACACTGGGTCTAACGCCAACCCCAAAGAAACAGGAGCCCTGAGGAGACCCAGCAGTGGACCCAGGGAAACACGCAGTGATAAAGGCGCTTCCAAACACTGAGCACAGGAGACGCTACAGAAACAAGTCTGTGAGTGAACACGGTGACTGCGGAGGCCAGGCCGTCTGGTGGTGAAACGGTCTTGTTGCTCCGACGCTTGGTGGAAGCCGTGGCCCTGACCCTGCCTCACTTCTCTGGCCTTCACACGAGACAGAGAGTTGAAATtgactctgcagcagctgtCGTTGGTGTCTAGTTGTCCTGTGAGTTGTTCGTTTTGAAATATCTTCCTCTCCTTGAGTTGTTGCCATCTtgcttcagtttgttttaaaccagAAATAGGACCAGTCCAGCGCTGAATAAGGCAAACTTGTTTATGTCCAATTTTgtctaatttattattttgaattattattttgactgtGCATCTAAGCAAaaggtttgttttctgcataaTGTTTGTACCATGACTCCAAACTTAAAGAAGTAAGATTGAATACTAGATAAAGTGTGCTAAGAACAGGATCAAGGTTACAATATAAACAGGAGATCTTCACTAAGACCTTTTGGAGCAAAACTCAAATGTTTTAGTTGCCCGTTTTCAAATGCATCTTACATCACCTGTGAAATACGTCTGTTTGTATTAATCTGGTCCCTGGCAGATCTGACTTGCCTGCACCCACGCTTTCAACAGTGGATGACAATTAACTCACCAGACTATCAAATCGGCCGATAAAACCATTAATCTGGCTAAGTCTTAATCACTGACTGAGAGGGCAGCGTGGGGAGGCTCATATTGtggtattgtactgtattacaccagctctgtggagagagaaacTGACACAGTTCCCATAGAGAGTGGCTCTCAGTTCTGCAACATAATCTCCCAACCACTGAagtacagcacagagagaaacagagacaggacTTCTGCAGCGGACGTGATGTTAGTTATtgggtttttatttcattcctgGTATCTCCTCTAATGCAATTCTTATCCATCGGAGATAAGACGTAAGCTTCTTGAAGCCTCGAGGGCTTGTGTTAGTGGCGGTGTGTTGTCGACGGTGGTGTTGTCGTTGTTGCGGGTTGTTGTTGACATTGTTGTTCTTTGTATTATCTGATCCCCGCCCGTCTCTGGCAGCTAGACGGCGCAGGgttattattttctgtctctCCTTGTAGAACCTCCAGGACAAGCAGTGTGAAATCTGCGGCGGAAAACAAACACGGCACGTTGGTTTTCATGACTTGTCGCAGCCCCGGTTGTAAAATCTAGACTGCAGGCTTAACTGTGAGTGTAATAAATAACctcaagtcattttttttttccctgagaCGGGACTTGCGTTTTGTATTCCATCACGGCGGATCGATTTATGGGAAGACATTACTTGCAACGCTGAATGCTCTTGCCCGGCGCCGGCGATGACGTACCATACAACACAGAGGACTGGCCCCCCGATGTACGCGGATCTCCAATTTAACGTTCAAACGCCATGGTCCCATTAACAAAACCATGAACTCGGGCGTAATCTCAGAAGTAATGAATATCgatcttgttttaattgtattttttttatttctcaaaccAAAAAAGCAATTTCAGCTCACGGCACTGCTGCAGATGACTAGGCCGACTCTCCAGTCGAGTCCCTGGACGTTCAGAGTCTATTACAAAagtcaatctttaaaataaataaataaactttctTTAATATCACTTATAAATTAGAGAGCAGTGAAGAGGGCCCTTCGTTTTAAGATTACCGCAAAAGGGAGGTTTATTACAAGAAATGGTAGCAGAAGGTTCTTTAAGTCCTGGCGATCTATACTGTGTACGGGCAGTATGTGAAAATCGCTCTTCTCTTATCTGTCCCCAGAGCAGGCAGTAAATTCAGGAGAATCAACCCTCGGCATTGCTCTGCCCCTCACTCCCCCACCCCAGAGAGGACACCTGCACAATCGATTCTCATCCGAGCCGCTGCTATCATCGGGAGTGCAGTTGGAAGCAGCAGACAGTGACTTTTGTTGCCTGAGCAAGCCAGTACTTGTATACACATCAAGTATACATGTCAAACTCTTGATTTATCCCTGTGGGCAaactgtggggggaaaaaaacaatccaacaaaGACTAAAAAACAACTGCCTATTTAGGATTTTTACTATTGAATTGAGAGATTGCCTACAATTTCCCCACAGGGATTTGATTATAacaatgtgtctgtttttgtcatAACAGTAAACTTGTTTTTTGCTTAAATTGTGGGTACCATGATTGCAACACAAGCACAACACATAATACAGAACTGTGTGTAACATCGGTAATGAGccatgttattaatattattgtgtaCAGCTACATTTGGATATCAAAGCTAACTTTAACTTTAGTTTTGGGACAATCTTGAGGTGGTACAAGTGTCGCTGGAGACCAGTGCCAACCTCTGGAGCGTGAGGGTCAGCTGGATTAGATCTCAGTCTCCAGAGAGTGCTGTCTGTCCATCTGCCTGCTTCTCAGAGGTCCCCAGAGGCGTGTGTTCGCACTGAAGCCTCGCTCAAGCGCAGCATCGCCGGGAAGAGTATGACTCTGACACGGCTCTGTAGCAGCCTCGAAGAGGAGAGTCGGGGAAGTCAggcattgtgtgttttatcttAGCGGGTGAGACACTGTTCTTCAGAGCAGTGGCGGAGGGGCTGGGCGGTACTTCAAACAAGACCGATGAAAACCTGTAGTATTCCtttgtgtggtgtgtgtctgCAAACAACAAATCTCAATAAGATAAATCACAACGCATTAGCAATAAAAGTAACTTGTGTCCTTTATCATTACCatcattgtaaatattttggatTACTGTGTTTTGGGGatgctttttcaaaacaatgtctCACAGTGCACTTGTTTAGTGAACATGTAGCACATAACCCAAAAGGTGCTTGGGATCTAAGCCAGTGGGCAGTACTGGTGTGATTGTATGGGCTGATGGTTCTGATCCAAGCAACGCAAGAGCGCAGAAAGCAGTCAGAGCGAGAAGTCCACTGGGGACAGTGCAGGAGATAATGGTGCTGATATTGCAGCTAATTACTGGACGTCGTGctggaggggtgtgtgtggggggtcaTTAGCAGCCACATGTCTTAATTACATATTTGCCCTTGATATTCAGGGGGGTAATGTGGAGCGTGTTCATTTCGAGGTGATTGTTGTCTTTTTGGGCAGATGTCTGGGGTGGATAAAGCTCCCCAATGCTGACAGAGGGCTGTGTCTGTGGAGACCTGCTTTAGACTGGAGAGGCTGGAACGAGCCTGCAACACCTTTATCGGACATTAGGAAGTGCAAGAAGTTGAGTTGAAAAAGAATAGGAGAGTGCTATACATGTAGAgaaacatgcagacacacacacacacaaagatcaGCAATGAGACTCAGCACAGTTAAGGAGAATATATTCCAGCTTCGCCTTAAGATCTGGGTGACCAGATGTCGCAGAACATAAAAGGAGCTTGTGAGCAGTGTTGTTCTGCGCCATCGTAATTGATCGTTAAAGCGGATCGTTAAAAAATCCCAGTTGAGCGCCTTCACACTCCTTCTGTTGCCCCCGAATGATGTTTTTAAGAGATCAGTGATTCAGACCTTAAagttaaatcattaaatacattaaatatatatgcaggAAGGCAACAACTGGAAAGGTTTGGGGATGCCACACTTTCTCACAGAACAATATGAACAAGCTGCAGACAAGTGAAGGACGATTTGTGGACATTCGGACTtaggaaattatattaaacatcaCAGTTACTAAACCTATGAACCTTCAGGTCCAAGACAGGCACCTCCCAGCCCAAATCCAACATCTATCTTCATGCTTACGGAGCTTATAGGATTGTGTAGAAACGTGGCGGTTATTGTAATGGAGTTTAAAACAGAAATTCGTGAGGAGGATAACCCCCCGTCGCACTTCACTCTCTAGCAGGCCAGATCAAGCAGATCAcgctcacacacccacactcttGTAAATAGCGCATCACGTCCTCCATCGCCGGCGTCAGTAGCCGCAATCACATTCTGTCTGGCTTAAACTCAGAACCACATCCGTCCGCCTCCCCGGTCTCTGTCTTTGTCGCAGCTCCTTGGCTCCATCCACCATGTGATGACCTCATCCTTCTGGGCGGCCGTTGGTCCCTTAGCCAAGCGGGTTAAAGCCAAAATAACTCCCATTACTGTAATCACTACCTTTACACCTGCATCTATAGAGACTTGTCTGAAGTACTGAAACAATATTTATCAAACCAAAGTCACAAGCTTTGGTAGCTGCGTAAACTTTCACGTCAGCTTCGACAACTGACAGATACATGTGTGATTCAGCCCGTGTGAT

Function

GO: NA

KEGG:

id description
K05204 GRIK4; glutamate receptor, ionotropic kainate 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10876 lncRNA downstream 51163 52203194 ~ 52203680 (-) True G8795
TU10852 lncRNA downstream 86302 52168340 ~ 52168541 (-) True G8776
TU10845 lncRNA downstream 91761 52116880 ~ 52163082 (-) True G8769
TU10840 lncRNA downstream 163596 52090869 ~ 52091247 (-) True G8765
TU10833 lncRNA downstream 189393 52063404 ~ 52065450 (-) True G8759
TU10916 lncRNA upstream 72995 52369239 ~ 52369463 (-) True G8829
TU10920 lncRNA upstream 257675 52553919 ~ 52554373 (-) True G8833
TU11032 lncRNA upstream 560462 52856706 ~ 52858452 (-) False AMCG00004529
TU11031 lncRNA upstream 561517 52857761 ~ 52859035 (-) False AMCG00004529
TU11107 lncRNA upstream 805657 53101901 ~ 53104836 (-) True G8981
AMCG00004518 mRNA downstream 13978 52237214 ~ 52240865 (-) True AMCG00004518
AMCG00004519 mRNA downstream 22339 52227620 ~ 52232504 (-) True AMCG00004519
AMCG00004517 mRNA downstream 32650 52212630 ~ 52222193 (-) True AMCG00004517
AMCG00004505 mRNA downstream 300503 51942693 ~ 51954340 (-) False AMCG00004505
AMCG00004502 mRNA downstream 335944 51870043 ~ 51918899 (-) True AMCG00004502
AMCG00004522 mRNA upstream 21387 52317631 ~ 52336606 (-) True AMCG00004522
AMCG00004523 mRNA upstream 57128 52353372 ~ 52399171 (-) True AMCG00004523
AMCG00004524 mRNA upstream 327162 52623406 ~ 52665227 (-) True AMCG00004524
AMCG00004525 mRNA upstream 430541 52726785 ~ 52733805 (-) True AMCG00004525
AMCG00004526 mRNA upstream 441894 52738138 ~ 52783362 (-) True AMCG00004526
TU10836 other downstream 183257 52068053 ~ 52071586 (-) True G8761
TU10834 other downstream 188961 52065526 ~ 52065882 (-) True G8760
TU10795 other downstream 300311 51953664 ~ 51954532 (-) True AMCG00004505
TU10541 other downstream 1529490 50723867 ~ 50725353 (-) True G8542
TU10487 other downstream 1581468 50671066 ~ 50673375 (-) True G8501
TU11033 other upstream 562798 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 562798 52859042 ~ 52860438 (-) False AMCG00004529
TU11035 other upstream 562798 52859042 ~ 52871546 (-) False AMCG00004529
TU11026 other upstream 603316 52899560 ~ 52911752 (-) False AMCG00004533
TU11054 other upstream 650568 52946812 ~ 52951387 (-) True G8937

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016987 True 2898 mRNA 0.55 19 NC_007126.7 22867174 ~ 23187582 (+)
grasscarp (Ctenopharyngodon idella) CI01000072_03497623_03625293.mRNA True 2865 mRNA 0.55 18 CI01000072 3497623 ~ 3625293 (-)