RNA id: AMCG00004522


Basic Information

Item Value
RNA id AMCG00004522
length 465
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00004522
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52317631 ~ 52336606 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGCTGACCCATCACACACAAGCAAAATCCTCCAGGTGGCGTCCATCGGAGGGGACCAGTGGTGGATAGAGCGGAGAGAGGGTCAGGTGTCGCTGGCTCTGAAGCCGTCCTGCGACAGATCCGAGGTGGCGGAGTTTTCCATGCTGCAGTTAGATGACGTGGCCGACGAGCGAGTCAACATTTTGGGCTTCTCGCTGTCCTCGGCGCTGCTGTATGACGCCGTCCACGCCGTGGTGGCTGCCGTCCACGAGCTGAACCGCAGCCAGAACGTGGGGGCCATGCAGCTCTCCTGCAAGTCCTCCAAAATCTGGGAGCACGGCACCAGCCTGATGAACTATCTGAGAATGGTAGAATTGGAAGGTCTAACCGGCCACATTGAATTCAACAGCAAAGGCCAAAGGTCGAACTACGCCCTGAGGATCATGCAGAACAGCAGAGAAGGACTAAGGCAGGTAAAGTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0044425 obsolete membrane part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10876 lncRNA downstream 113951 52203194 ~ 52203680 (-) True G8795
TU10852 lncRNA downstream 149090 52168340 ~ 52168541 (-) True G8776
TU10845 lncRNA downstream 154549 52116880 ~ 52163082 (-) True G8769
TU10840 lncRNA downstream 226384 52090869 ~ 52091247 (-) True G8765
TU10833 lncRNA downstream 252181 52063404 ~ 52065450 (-) True G8759
TU10916 lncRNA upstream 32633 52369239 ~ 52369463 (-) True G8829
TU10920 lncRNA upstream 217313 52553919 ~ 52554373 (-) True G8833
TU11032 lncRNA upstream 520100 52856706 ~ 52858452 (-) False AMCG00004529
TU11031 lncRNA upstream 521155 52857761 ~ 52859035 (-) False AMCG00004529
TU11107 lncRNA upstream 765295 53101901 ~ 53104836 (-) True G8981
AMCG00004521 mRNA downstream 21387 52254843 ~ 52296244 (-) True AMCG00004521
AMCG00004518 mRNA downstream 76766 52237214 ~ 52240865 (-) True AMCG00004518
AMCG00004519 mRNA downstream 85127 52227620 ~ 52232504 (-) True AMCG00004519
AMCG00004517 mRNA downstream 95438 52212630 ~ 52222193 (-) True AMCG00004517
AMCG00004505 mRNA downstream 363291 51942693 ~ 51954340 (-) False AMCG00004505
AMCG00004523 mRNA upstream 16766 52353372 ~ 52399171 (-) True AMCG00004523
AMCG00004524 mRNA upstream 286800 52623406 ~ 52665227 (-) True AMCG00004524
AMCG00004525 mRNA upstream 390179 52726785 ~ 52733805 (-) True AMCG00004525
AMCG00004526 mRNA upstream 401532 52738138 ~ 52783362 (-) True AMCG00004526
AMCG00004528 mRNA upstream 472989 52809595 ~ 52821661 (-) True AMCG00004528
TU10836 other downstream 246045 52068053 ~ 52071586 (-) True G8761
TU10834 other downstream 251749 52065526 ~ 52065882 (-) True G8760
TU10795 other downstream 363099 51953664 ~ 51954532 (-) True AMCG00004505
TU10541 other downstream 1592278 50723867 ~ 50725353 (-) True G8542
TU10487 other downstream 1644256 50671066 ~ 50673375 (-) True G8501
TU11033 other upstream 522436 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 522436 52859042 ~ 52860438 (-) False AMCG00004529
TU11035 other upstream 522436 52859042 ~ 52871546 (-) False AMCG00004529
TU11026 other upstream 562954 52899560 ~ 52911752 (-) False AMCG00004533
TU11054 other upstream 610206 52946812 ~ 52951387 (-) True G8937

Expression Profile