RNA id: AMCG00004523


Basic Information

Item Value
RNA id AMCG00004523
length 1065
RNA type mRNA
GC content 0.59
exon number 8
gene id AMCG00004523
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52353372 ~ 52399171 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGCGTGGCTTTGCGGATCTCTCCGGGCTTTGGCAGTAAGCGACTCCGTGGGCTCGATCGGGGgcacattaaatattgaaTCCAGCGCTGACAGACTCCGCTTGTGTGCCGAGCAGGTCGGGGCAGAAAGCAGTGTCGCGGCGATCCTGGATGACCCGATGGAGTGCAGCCGAGGCGAGCGGCTGGCCATCACGCTGGCGAAGGAGAGGATCAACCGGGCCACAAACCGCTCCCAGACCGCCAAGCTGGAAGTGGACATCTTCGAGCTGCTGAGGGACAGCGAGTACGAGACCGGAGAGACCAtgtGCCAGATCTTATCCAAGGGGGTTGTGGCGGTCCTGGGCCCCTCTGCCAGTCCAGCCTCCAACTCCATCATCAGCAATATCTGCGGCGAGAAGGAGGTACCCTATGTCAAGGTGGCCCCAGAGGACATCCTGAAGGTGCAGTTCCCCCGCTTCACTACCCTGAACCTCCGCCCCACCAACACCGACATCAGCCTGGCTGTGGCGGGCCTCCTCAACTTCTTCAACACCACCACCTCCTGCCTCATCTGCGCAAACGCCGAGTGTAAGCCTCCTGTTTTACTCAGTTTTCCCTCTGTGTTGGGACTTGTCATCACCTCCACCCATTGCTGGGACACGCCAACACAGGGCAGGAAGTGGAAACTCACCTCGGCTGGGGTCCTGCCAAACCCTGGCAACTCTAGCGTGAGGTTAGAAAAGAGGGGCACAGCTCTGGCTGTGGAGCTCTTTGAGgcagaaatgtatttgaagaacTGCGTGACAGAGATCGGGACCTTATCCCCTTACCCACTCTGTCTTGCAGAAGCAGAAGGCCTGCTCAACCTGGAGCGTTTGCTGAGGCAGTTCCTGATCTCCAAGGAGACGCTGTCCGTGCGCATGCTGGACGACAGCCAAGACCCCACCCCCCTGCTGAAGGAGATCCGGGATGACAAGACAGCCACTATCATCGTGGACGCCAATGCCAGCATGTCCCATATCATTCTGCAGAGGGTAGGACCCACCTCCGCCCCTTCCCCCAAACTCCAGGTGTCCCCGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10876 lncRNA downstream 149692 52203194 ~ 52203680 (-) True G8795
TU10852 lncRNA downstream 184831 52168340 ~ 52168541 (-) True G8776
TU10845 lncRNA downstream 190290 52116880 ~ 52163082 (-) True G8769
TU10840 lncRNA downstream 262125 52090869 ~ 52091247 (-) True G8765
TU10833 lncRNA downstream 287922 52063404 ~ 52065450 (-) True G8759
TU10920 lncRNA upstream 154748 52553919 ~ 52554373 (-) True G8833
TU11032 lncRNA upstream 457535 52856706 ~ 52858452 (-) False AMCG00004529
TU11031 lncRNA upstream 458590 52857761 ~ 52859035 (-) False AMCG00004529
TU11107 lncRNA upstream 702730 53101901 ~ 53104836 (-) True G8981
TU11129 lncRNA upstream 748594 53147765 ~ 53147974 (-) True G9002
AMCG00004522 mRNA downstream 16766 52317631 ~ 52336606 (-) True AMCG00004522
AMCG00004521 mRNA downstream 57128 52254843 ~ 52296244 (-) True AMCG00004521
AMCG00004518 mRNA downstream 112507 52237214 ~ 52240865 (-) True AMCG00004518
AMCG00004519 mRNA downstream 120868 52227620 ~ 52232504 (-) True AMCG00004519
AMCG00004517 mRNA downstream 131179 52212630 ~ 52222193 (-) True AMCG00004517
AMCG00004524 mRNA upstream 224235 52623406 ~ 52665227 (-) True AMCG00004524
AMCG00004525 mRNA upstream 327614 52726785 ~ 52733805 (-) True AMCG00004525
AMCG00004526 mRNA upstream 338967 52738138 ~ 52783362 (-) True AMCG00004526
AMCG00004528 mRNA upstream 410424 52809595 ~ 52821661 (-) True AMCG00004528
AMCG00004529 mRNA upstream 451312 52850483 ~ 52871113 (-) True AMCG00004529
TU10836 other downstream 281786 52068053 ~ 52071586 (-) True G8761
TU10834 other downstream 287490 52065526 ~ 52065882 (-) True G8760
TU10795 other downstream 398840 51953664 ~ 51954532 (-) True AMCG00004505
TU10541 other downstream 1628019 50723867 ~ 50725353 (-) True G8542
TU10487 other downstream 1679997 50671066 ~ 50673375 (-) True G8501
TU11033 other upstream 459871 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 459871 52859042 ~ 52860438 (-) False AMCG00004529
TU11035 other upstream 459871 52859042 ~ 52871546 (-) False AMCG00004529
TU11026 other upstream 500389 52899560 ~ 52911752 (-) False AMCG00004533
TU11054 other upstream 547641 52946812 ~ 52951387 (-) True G8937

Expression Profile