RNA id: AMCG00004524


Basic Information

Item Value
RNA id AMCG00004524
length 4358
RNA type mRNA
GC content 0.60
exon number 36
gene id AMCG00004524
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52623406 ~ 52665227 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGGCAATGTAGCATTCTCACCAAGGACCCCCCCCCTGACAAGAAGCACAAGAGTGACAAACCCACTGTCCCCTCGCATGAGTTTGACCCTACAGGGCTAGTTCAACGCTGTGTGATTATCCAGAGAGATGATAATGGCTTCGGGCTGACAGTGAGCGGAGACAATCCAGTGTTTGTGCAGCTTGTCAAAGAAGATGGCGCTGCGATGCGTGCTGGTGTCCAGACAGGGGACAGAATAATAAAGGTGAATGGGACCCTGGTTACACATTCAAACCATGTAGAAGTTGTGAAGTTAATCAAATCGGGCTCCTATGTGGCTCTCACAGTCCTGGGAAGACCCCCTGGATTACCCCAGATTCCTCTGTCCGAGTCGGAGGGGGATCCAGGAGCGCTGGTCCAAGGGGGGTCCTCAGTCACCTCTCCACACTCCCCCGGACAGACAGGAGGGGAACGCACATCCAGCCCCTCGGATCGCATCACTGCCCCTGTTCCCGTCTGGgaagaaaacaacattgtCCATAACCAGAAGGTAGATATCTTACAGAAGATGCTTTCCAAGGAGCAGCGAGATTTGCAGCTGATGAAGGAGGAGTACAGCCGAAACCCTACACCTAAACTACTGAAGGAGATCCAGGAAGCCAAGAAGCACATTCCCCAACTGCAGGTCCAGCTCAGCAAGGCCACCGGCGTGGTGCAGgACGGGCTGCACCCCTCTCGGTTGCCCTCCGACCCCCTGCAGATCACCGAGGGCGAGGACGGCAGCGGTGACGCGGACCAGACTCTCTCCCCGCGGGGCGACAGTGGCACAGAAAGCCCCCGGCCAAACAGCACGGGCTCCAGCTTCTCGCCCAGTCTGTCGTCCCCCTTCACGGACTCGCCCTGCCAAAGAGAGACGCCCTGCCACAGCCCAAAGACCACCCCCAAGGACAGGCTCAACTCCTTTGACTCTCCAGAGGCTGAGGAGACGGCGGacctgGACTCTCACTCGCAGTCCAGTGTGGGCAGCCCCCCGACTCGCCTGGCCTCCCAGATCATCGGAGCCGAGGACGACTACTTTGAGACGGAGCAGGAGCAGATTAATGGCCAGTGCAGCTGTTTCCAGAGCATGGAGCTGCTCAAGTCTCGGCCGGCACACCTGTCCGCGTTTCTCCACCACGTCGTGTCACAATTCGACCCTGCGCCGCTGCTCTGCTACCTCTATGCTGACCTCTACAAGCAGACCAACTCCAAAGAGACCCGCCGCGTCTTCATGGACTTCCACTCCTTCTTCATGGACAGAGGGGCGAATCTGAAGGTAGCTGTTCCTGAGTCCATCTCTGCAGAGCTCGAGAAGAGGAGGCCGGAGCTGATTCCAGAGGAGCTGCACAGGCAGTATGTTCAGCTGATGCAGGAAGCTCTGATGCCCGACATCCAGAGAAACCTAGAGGACTTCAGGCAGAAGCGCAGTATGGGACTGACGCTGGCTGAGAACGAGTTGACCAAGCTGGACACCGAGCGCATGAGGGACCGTGTGGCGCTGGAGAGGGAGCGCTCCTGTGCCGAGCAGATCATCACAAAGATCGAGGACGTCCTGGCGACAACACAATCCACAGAAGAGGAGAAGTGCACCACCATGCAGTACGTCATCCTCACCTACATGAAGCACCTGGGTGTGAAGGTGAAGGAGCCGCGCAACCTGGAGCCGAAGCGCGTCCGTATCGGCTTCCTGCCCAAAATCAAGAAGAGCATCAAGacggagaaggagggagaggagaaggtGAAGAAGCCGCGCTTTCCCAGCATCCTCGGCCAGCCCCGGAGGCCCAGCCGCCACGATAGCACTGCCATAGGCCGAGCCATCGAGATCAACAGGAGGACCCAGAAGCAGCCGTCCCAGCCGGCCCTCAGCGTCCCCGAGCACCCGGACCCCAGCCGAGCCCGGGGCAGCCAATCCAGCGAGGGATCGGACCCCATGCACACCCCGGCGCTGGCCACCTCGCCCCCCtacagcagcggcagcagctTGGCTGGCGAGCAAGGGGGGCGCGACTCCGACTCCGGCCTGACTCCCTCCTCGGCATTGCCTAAACAGAGCGAGGGTCTTCACTTGGGGGACTCCGCAGACGGCATGCCACGGACCCCCAACACCATCTTTGATTTCAGCCTCTCCGCTCTGGACCACCTACCGGAGGAGGAGCGGGAGATGGACAGGATCATTGAGAGTGGGACTCCCAAGGCCATCAGGAGGATGGACACGCTGAGCGGCGGGGAAGTGCAGAGCGAAGACGACCAGTGCTACGAGATCGACTCGGAGCTGGATCCCCCGAACTGGCAGCAGCTGGTGGGCAGGGAGGTTCTGGCCGGTCTGACGCCCCACGAGATCAAGAGGCAGGAGGTCATTAATGAGCTCTTCTACACGGAGCGCGCTCACCTGAGGATGCTGCGGGTGCTGGACCAGGTGTTCTACCAGAAGCTCACGAGAGAGGCCATCCTGCCACCCGCCGACATCAAGCACATCTTCGCCAACCTGGAGGAGATTCTACAGCTGCACGTTTCGATAATCGAACAAATGGCGACAATCCGAAGGAAGAACGAGACGTCCGTGATCGACCAGATAGGAGACGACCTCCTGTCTTGGTTCAGCGGCGGGGAGGAGGAGAAGATCAAGCGGGCGGTGGGCACTTTCTGTAGCAACCAGCCCTTCGCACTGGAGCTCATCAAGAGCCGGCAGAAGAAGGACTCCCGATTCAGTGCCTTCATACAGGAGGCCGAGAGTAACCGTCTGTGCCGCAGATTGCAGCTGAAGGACATCATCCCTGTGGAGATGCAGAGACTGACAAAATATCCCCTCCTGCTGGAGAACATCGCCAAGTACACAGAGGACAACGAGGAGAAAGAGAAGATCAAGAAGTCAGGCGAATGCTGTCGGCAGATGCTCAACTACGTCAACCAGGCAGTCAAGGAGTCCGAGAACAAGCAGCGACTCGAGGACTATCAGCGCCGGCTGGACCTCTCGTCCCTGAAGCAGAGCGAGAATCCGATGATCTCGGAGTTCAAGAACCTGGACCTGACCAAGCGGAAGATGATCCACGAGGGACCACTCTCTTGGAAGGTTAATAAAGACAAGACAATCGAGCTGTACACCTTGCTTCTGGAAGACATCCTGGTCCTCCTACAGAAGCAGGACGAGAAGCTAATCCTCAAGTGGCACAGCAAGAACCTGGCCGGCACAGCGGACACCAAGCACACCTTCAGCCCCATCATCAAACTCAACACCGTGCTGGTGCGCTCGGTGGCCACAGATAACCGGTCCTTCTTCGTGCTTTCCATGTCTGATAATGGTGCTCAGATCTACGAGCTGATGGCTCAGACAGTGTCGGAGCAGAAAACTGGTGAGCGAGAGGAAGTGGAGCTGATTGGCAGCAGCACGAACCAGAAACTGAACAAAGACTCCGACCGCATCTCCACCGGAAGCATCCAGTCCCCAGAGAAGGACGTGGGTGTGGTCTCGCCGGGGATGCTGCCGACTCCGCCCCCGGGCTCTGCATCATTCGAAGGGCATGAACCagaaggggaggaggaggcggagagCGACGTCAGGGAGGTGTCCTACCTGGAGCCCGAGCTGGAACACAGGCTGCCCTTCCTGCCCCAGAGGTCACGCCAGGGCGTTGCAGTTGACGACGAAGAGCCGGCCGCCTTAAGCATCCCACCCTCCCCGTCGAAAGCCCAGGAGGCACTCGAGAGCCtGGCAGCAATTAAAGAGTTCCTCGTCGGCCAGCTGCTcctggagagaggggagagcgGGAGGGCATCCCCGGACCCCCTGCGCGCCAGACCTGTCTCCTCAACGCGGCTCCTCCGCACGACGTCACTGCGCGGCCCCACGGACGGAGCCGGGCCGGGGGCCTCCTCTGCGTATCACTCCCCGGAGAACGGTGCGGAGGAGAAGGGTCGGGCCCTCGGGGGCAGTGACCCGGGGAGAGGCCTCAGACTGGGCCGGGAGATGGGCCGGGACCCAGCCTCCGAGGAGATGGACGAGCGGTTTTTCGAGGCTTCCAATGACTACAtgagctacctggtcctggagggctaCGGCGGCACGGGTGAGAGCAGTACCGATGACGACCTGCTGAGTGGTGCCAGAGACCCGGGAGGGCGGCGAGGGTCGGCTGGCGACTCGGGAATCGACTTGAAGAAACTGGCCTCGTTCTCCTCGCAGGCTGGTGGGGCGCACAACTTCAGGCAGCAGGTCATGACGCACTTCAAGGTCCTACAGGACAACCTGCAGATTCTTAAGATAAAAGTTAGTGAGGGCAGAAGAGTGCCTGCCCCTGCATCTGCCCcgggagggaggaggaagggacGGACGGAGtag

Function

GO: NA

KEGG:

id description
K07532 ARHGEF12, LARG; Rho guanine nucleotide exchange factor 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10920 lncRNA downstream 69033 52553919 ~ 52554373 (-) True G8833
TU10916 lncRNA downstream 253943 52369239 ~ 52369463 (-) True G8829
TU10876 lncRNA downstream 419726 52203194 ~ 52203680 (-) True G8795
TU10852 lncRNA downstream 454865 52168340 ~ 52168541 (-) True G8776
TU10845 lncRNA downstream 460324 52116880 ~ 52163082 (-) True G8769
TU11032 lncRNA upstream 191479 52856706 ~ 52858452 (-) False AMCG00004529
TU11031 lncRNA upstream 192534 52857761 ~ 52859035 (-) False AMCG00004529
TU11107 lncRNA upstream 436674 53101901 ~ 53104836 (-) True G8981
TU11129 lncRNA upstream 482538 53147765 ~ 53147974 (-) True G9002
TU11147 lncRNA upstream 516724 53181951 ~ 53183364 (-) False AMCG00004551
AMCG00004523 mRNA downstream 224235 52353372 ~ 52399171 (-) True AMCG00004523
AMCG00004522 mRNA downstream 286800 52317631 ~ 52336606 (-) True AMCG00004522
AMCG00004521 mRNA downstream 327162 52254843 ~ 52296244 (-) True AMCG00004521
AMCG00004518 mRNA downstream 382541 52237214 ~ 52240865 (-) True AMCG00004518
AMCG00004519 mRNA downstream 390902 52227620 ~ 52232504 (-) True AMCG00004519
AMCG00004525 mRNA upstream 61558 52726785 ~ 52733805 (-) True AMCG00004525
AMCG00004526 mRNA upstream 72911 52738138 ~ 52783362 (-) True AMCG00004526
AMCG00004528 mRNA upstream 144368 52809595 ~ 52821661 (-) True AMCG00004528
AMCG00004529 mRNA upstream 185256 52850483 ~ 52871113 (-) True AMCG00004529
AMCG00004533 mRNA upstream 233532 52898759 ~ 52911726 (-) True AMCG00004533
TU10836 other downstream 551820 52068053 ~ 52071586 (-) True G8761
TU10834 other downstream 557524 52065526 ~ 52065882 (-) True G8760
TU10795 other downstream 668874 51953664 ~ 51954532 (-) True AMCG00004505
TU10541 other downstream 1898053 50723867 ~ 50725353 (-) True G8542
TU10487 other downstream 1950031 50671066 ~ 50673375 (-) True G8501
TU11033 other upstream 193815 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 193815 52859042 ~ 52860438 (-) False AMCG00004529
TU11035 other upstream 193815 52859042 ~ 52871546 (-) False AMCG00004529
TU11026 other upstream 234333 52899560 ~ 52911752 (-) False AMCG00004533
TU11054 other upstream 281585 52946812 ~ 52951387 (-) True G8937

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_03844170_03870555.mRNA True 4643 mRNA 0.51 35 CI01000072 3843492 ~ 3870555 (-)