RNA id: AMCG00004525


Basic Information

Item Value
RNA id AMCG00004525
length 3198
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00004525
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52726785 ~ 52733805 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGATCCGTCCCAGGCCGGCCGAGACCAGCCCTCCCTCCGCGGCGCGGCGCTGGAGATGAGCAGCGGCAGAGAATCGCCGCAGACCCGGCGTCCAGCATCGCTTCAGCCCGCTGCGCACATGCGCGACTCAGCCTGATTGGCTGGATCGCGCTCTACGCCTCTTTCTGTCACCTGAATGCTCGCCGCGGCTATGAGTGGAGCTGCCGCCTGGTGACGCTGCTCCACGGCATCCTGATCGTCTGCTCTGAAAACACCCCTCTGCAGGTCCAGGCCATGGTTCTCAGCCTGGGCTACTTCATCTTCGACATGTGCTGGTGCATCTACTTCCAGACCGAGGGCGGCGTCATGCTGGCCCACCACACCTTCAGCATCCTGGGCATCCTGCTTGCGCTGTGGCTGGGCGAGTCGGGGCCGGAGGTCAGCGCCGTGCTCTTCGGCAGCGAGATCACCAACCCCCTGCTGCAGGCACGCTGGTTCCTGCGCAAGACGGGCCGCTACGACAGCCTGGCGGGGGACGTGGTGGACCTGCTCTTCGTGCTGCTGTTCGCGGGGGTTCGGATCGGGGTGGGCGCCTGCATGCTGGGCTGCGAGCTGGCCTCCCCCCGGCCCAGGCTGGTCATCAAGGTCGGAGGGGTGGCCATGTACGTGCTCTCCTGGATCTTCATGGTGGACATTGGCCGTTTCGCCTACAGGAAGAGCTCTGCCAAGTACCGGCGGTGGTGGGCAAGCCGGAGCGGGGCGGCAGGAGCGGACACCAATGGGCATGCTGGGAAAGTAGACTGAAGGACTGGTCGCCCATCCTTCCTCCCTGGAAAGGGAATTTGTAGAAAaggaggttttgttttggaCAACTGCTTGAAGATTCCCTTTCCCTGTCGTCTGTAGCTCAGTAGAACCAATTCTTTTCATATTCATGTCACCgtactttcttttctttatcgTTGTGTCCCCAGCTGAccgtatttttaattaaacgcTGGGAAAGCTGTTAATTGGGACTTACAGTTCAGCACTGCTAGAGGTAGACGTTGGAAGAGATACTAAATTAAGTGTGTAGCTCTGAAAACTAGGCTCACACACAATCATCTATCCTGCTTTTCCcccttttgattttgttcatttatttcctGAGCTGCACACATGAAAAGCGCTTTAACTTGACAGTCACCTATTCCCCATCCCATTCCTTTCATCCCATTCTTACCTGCTGTTTTGTTCCTCTCCGTTTGACAAGACCTGATTGAATCTGGGCTCAGCTCACCTGTTCCCACTGAATGAAACCTTCTGCTGGAGATCCCCCAGGCAACTCCATGGGAAAACCTTTCAAAAGCGAGATAATTTAACATCTGTGGCTTGAACCTCGGTATTTAAAGTTCACCCCCAAAGAAACATTGTTATGTCTATATTTTCTCAGTCATAGTGGGTCACCGTTTAAACCCAAGAGGGGGTCTAGATATCCTCTTCTCCGATGGCCTGCTGGGAACACATGTGAAGTCTCGACTCTCACATACTCCTTCGTTTGTGTGAAGGAAACGTCAAACAAGACAGGGCTGTGGGGACAAAGAATGACCTGAAATCTGTCGTTTGGTTTCCCTGTGTTTTGCTCagtgagagggagtgagaggcACTGTGTCAAAAGACCTGTGGAAACGCTCCTGTTCTTAGAAGGTCCCCACAAATACTCGGAGATCTGCGGTGTAAGAACTAAATCTGTAGGCGGTTCTTGTATTTGAAAAGTGTCTCATTTCTGTTTGTACTTTTCAACTTTGGTTTATTGTAATTCTCTGCCAGAACACCCAAGTGTAAAAACACCGTTCTCTCCCCCAAAACCTTCTGTAAGGGCTTTTTTTATGAcactaaactaaaaaacaaagccATGATTTTGTTAAAACCTTCAGACAAATGAACAGTAGCCAAGCACAGGTTCCTAGCATTTGAATGATTGTTGTGTGTTAAGGGTCAGCCAAGAACTGGCATTGTGTTGAGCTTGTTCTTAAAACTAATGTCTTtaacattccttttttttaaatgtgcaatagGAAGATAGGACTTTTTGTTCCAGTAATGTTTTACACTGAAAGGATGCTTTTTAAACTAACGTCTTACTAAGTTTATTAGTCTGACTCCTGATCAAGGCACTGGTGTGAGAGACAACAGTTAATCCAACGGCAAGCGCTCTGTGTGAAAATCATTTCCACGTCTCTTCTCCAGCGTTTCAAAGTGGCAGCGATGTTAGAACTGCTTTAATTCTATACTCCTCTTTCAACCAGCCATCAAAACAACGCTTGACAGTGACTGGGTCTCCGAGGGGGTTGTTGAGGTGTCTGTTCTCGTTACGAGTGTCAGACGTGGTCCCTGGACATTTTGTCGACCTTCAGACACAAACGGTTTCCTTGCTTTGCTCGCAGCTTGACAATGAAACCAGCGGTTAGTGAAATTCACTTGTGTCGCAGTGTCACTTTAATACAAGATGAGGAAAATAGTGGCAGAGCTGTCGTGAGTGTGGAACTGGCGTGTTTGTTGAGCAGTGCACTATATAAACAGGCACCTTCCCCTCACATCCTTACAACAGAGTCTCCCAGAAGGCCTTGCAAAAACCCACACACTGTGATATCGCAGGCCTGGGGAGGGTCTCCGGTGACCGCAGTCTCTCAGAAGGGGAAAAGGTTGAAAAATGACCTTGCACAGAGGAGCGCCTTGCCTTTGGATCTCTTTCTAAACGACTTCCCgtctcttttgtattttaaacagtgagAAAACACTTTTACAAACTGAAGCCGTtttcttatacattttaactCGGATGGTTATTTTATAAATTTCTATTGAGGCgaggaaatgttttcttttgtattctgtaatcATCTTCAAGTCTCTCTTCAACCGCAGCGTTGTTTTAATCGACTTCTCTGGATTGTAAACCTGCTGTTGGTTTTTAAAGCCATCGATAGGCTCTTCTTTTAACCCTTTACATGAAAAGGAAGGGACCTACATCCATATTGAATGATTGAGTCTCGGATGGCTCCCAGTTGATTGTGCGCTGATTCAGCTGATCATGAGTTTCCATCGAggaatttaaatgtgatttttaggGTAAGACTTGAAGGTGAGGTTTGTAAATAAATGCCAGTTGATTGTGAGTGGAAGATGGATTCATTATCTGTTGTCTTTacacatattaataaaaaaatatag

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10920 lncRNA downstream 172412 52553919 ~ 52554373 (-) True G8833
TU10916 lncRNA downstream 357322 52369239 ~ 52369463 (-) True G8829
TU10876 lncRNA downstream 523105 52203194 ~ 52203680 (-) True G8795
TU10852 lncRNA downstream 558244 52168340 ~ 52168541 (-) True G8776
TU10845 lncRNA downstream 563703 52116880 ~ 52163082 (-) True G8769
TU11032 lncRNA upstream 122901 52856706 ~ 52858452 (-) False AMCG00004529
TU11031 lncRNA upstream 123956 52857761 ~ 52859035 (-) False AMCG00004529
TU11107 lncRNA upstream 368096 53101901 ~ 53104836 (-) True G8981
TU11129 lncRNA upstream 413960 53147765 ~ 53147974 (-) True G9002
TU11147 lncRNA upstream 448146 53181951 ~ 53183364 (-) False AMCG00004551
AMCG00004524 mRNA downstream 61558 52623406 ~ 52665227 (-) True AMCG00004524
AMCG00004523 mRNA downstream 327614 52353372 ~ 52399171 (-) True AMCG00004523
AMCG00004522 mRNA downstream 390179 52317631 ~ 52336606 (-) True AMCG00004522
AMCG00004521 mRNA downstream 430541 52254843 ~ 52296244 (-) True AMCG00004521
AMCG00004518 mRNA downstream 485920 52237214 ~ 52240865 (-) True AMCG00004518
AMCG00004526 mRNA upstream 4333 52738138 ~ 52783362 (-) True AMCG00004526
AMCG00004528 mRNA upstream 75790 52809595 ~ 52821661 (-) True AMCG00004528
AMCG00004529 mRNA upstream 116678 52850483 ~ 52871113 (-) True AMCG00004529
AMCG00004533 mRNA upstream 164954 52898759 ~ 52911726 (-) True AMCG00004533
AMCG00004534 mRNA upstream 193556 52927361 ~ 52931681 (-) True AMCG00004534
TU10836 other downstream 655199 52068053 ~ 52071586 (-) True G8761
TU10834 other downstream 660903 52065526 ~ 52065882 (-) True G8760
TU10795 other downstream 772253 51953664 ~ 51954532 (-) True AMCG00004505
TU10541 other downstream 2001432 50723867 ~ 50725353 (-) True G8542
TU10487 other downstream 2053410 50671066 ~ 50673375 (-) True G8501
TU11033 other upstream 125237 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 125237 52859042 ~ 52860438 (-) False AMCG00004529
TU11035 other upstream 125237 52859042 ~ 52871546 (-) False AMCG00004529
TU11026 other upstream 165755 52899560 ~ 52911752 (-) False AMCG00004533
TU11054 other upstream 213007 52946812 ~ 52951387 (-) True G8937

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016980 True 3634 mRNA 0.41 3 NC_007126.7 22435460 ~ 22444746 (+)
eurasian perch (Perca fluviatilis) TU17292 True 254 lncRNA 0.51 1 NC_053113.1 55149 ~ 55402 (+)
tiger barb (Puntius tetrazona) TU17292 True 2612 lncRNA 0.42 4 NC_056700.1 12658294 ~ 12661872 (-)
mexican tetra (Astyanax mexicanus) TU17292 True 952 lncRNA 0.42 2 NC_035898.1 22528680 ~ 22531101 (-)