RNA id: AMCG00004528


Basic Information

Item Value
RNA id AMCG00004528
length 2879
RNA type mRNA
GC content 0.59
exon number 21
gene id AMCG00004528
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52809595 ~ 52821661 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCACTAGAAAACGCATTTGTTTCCTGCgagtgttgtttattttctccagtaTTCAAGGTTCAAAACTTTTAAATGGAATTCATATTTATCAGGTAGAATGCACAGTTATATTGCGTTCAGAGGGAGAGTAAGTGTTGGATTCATTTCCCCCAGGAGCACTTTGCTAACGCTTCTGACTTCTGCAGGTTTGCTTTACTCGCAAGCTGTTTGGCTGTCCGCCCGTGCAGCGTACGCGCAGGTCCACTTTCTGATCACCTCCAAGGACGGTGCCGGACTGACTCTCTTCACATCCGAATCGCTAAGGGATTCATGGAAGCGCACAATGTCACCGTGTCTGTTGAAGACAAAAATGCACTCGCTCATCCGCTCGGTCCCTCCCTGGATGCTAAATGTGGGTATAAACAGCGGAGGAACTACAGAGGAGATCTGGAAGTCACGGTTTCTCTCATGGCCTGTCACGTGTATTTAGAGcaGCAAAAAGAGCGCCTTGTGTTCAATATGGCAGTGACCTACGTCCCCAGGGACGCCTCCAGCCCCCCCACCACGGAGgtcttctccttctcctgtcACCAAAGGCTGGGAAGCGCCCGACGCCGAGTGCTCTGTGAAGAGAAGTACATAGAGGTGTCCCTCAACATTGATGTCCCCTTTCATTATTCTACGGGGCAGCACAAGAAGGCCGGAGCCGCCGCCGCCAGCCGCTGGTATTTCGACATTCGCTACCCCGATGGCAGTACGGTGACCAGGGACCAGAAGTGGGTGTGGTCCCACGGCATCGGGGTGAACACGGAGAACATGGGCGGCTGGATCACTCTCAGGGTTCCCCACGGCAGCCCCATCGTCCGCAGGAagGATTACCATGGTTATCCCACCCTGGGTTATAACGTGGTGGCCAAACACGAGGAGTTGCTGACTGGACTGCGCTACAACCTGAGTGCGGTCTGTCCCATAGTCAAGGTGAGCTGCGAGGGCAACAACGTGACTGTGGCCGCCGTCTCCCTGCGGCTCCCTGGCCGAGCGTCCAATACAGAGAACCTGGCCCTCCGCCTGCAGTTGGACGGCTTGTCTCTGTCCCAGGAGGACACCCTGTCCAGGGGATACTCCCTCCAGCTGCGGGACAAGGAGCTCCGGGCTTCCTTCGGCGTCTTGGCCAACCCCCTGGTCAGAGAGGGCTCTAGAGTGATGAACAGACACCAGCTGTCTCTGGTCCACGTGTGGAGGGACCGAACAGACCAGCGCAATACCAAAGCGGTCATCTTTGTGCCCGGGCACACGTGTAGTCCCCAGCCCCCGGAGGCGGTCAAGAAGAACGGGTTCAACATCACGTACGGCCCGGTCCCTAAAGACTACACCCTCTCCGCCCTCTCCATCGATGGCGTCCTCTTCCAGTCCGTCGAGGACCTGCCCTGGGGCGTCACTGTCCGGCTCGTCCAGCACCCGTACTTCCTGTACGTCCGGATCTTGGCCCGTTTCGGGAGCCGCTTGGTGCCTCGCAAGTATGTCGGTGGCTTTACCTCCCAGTACTCTGTGTGTCCCGCGCTCATTTTCAAGACCGCTGAGGGCAAGGAGGAGATCGTCGAGGAGAAGGAGCCCTACAATTTCAGTCGAGAGGATATCGTCCTCCCCGTGCTGGAGGGGTTCTGCGGGAACGGCAGCGTGTGTTTCAACGTGACCCGAGGCAACGCGGACAACTTCTGGAGCTTCCACATTTGGGACGCCCCCTTCCTGGTGAACCAGGCTGCGCAGCGCGGCCACTCCTACACCAGCCGCAAGACGCGTTTGGTCTTCTGCGTCAGCGTCGACTCGCCCGACCTGCTGCATCAGAGAGTGACACCAGGCCGGCGGACGCTGCTGCTGGCCGTGTCGTTCCGGGACCGAGCGAAGGGAGGCGTAATGGTGTCGGCGCGGCAATCCTGCACCTTCCCTTCTGCGGGGGAGCTGGAGTGCACGGAGGAGGGGCTGCTCAAAGCGAGCGGTCTGCGACTGGCCGCGTCCCCCTCGGCCGCCCTGGAGCAGCTGACAGTGCGTGACCCCAAGTGTGGCCCCTCGGAGGTCTCCCGGGGTCTCGTCTCTTTCTCCTTCCCCGTCAACACCTGTGGAACCACAGAGAAGGTGCAAGGGAGGTTCGTGGAGTTCGAGAACAAGATCTCTAACCAAAAGACGCTGGATTGGACGGCCCCCGAGTACCTGAGGTTTCATGCGACCCTGCTGTGCCGCTACAGAAGAGAGGAGTTGCTCACCATGGGTCTGGTGGGCCTAATGACCCCCCGCCCACCCCTACCGGCCCGCGGCAATGGCAACCTGACCCTGCGCATGGACATCATGAGAGACTCAACCTTCTCCTCTGCGTTCACGGCGGACGAGTTTCCAGTGGCGCGACGTCTCCGCGAGCCGGTGTTTGTCCAGGTGATGGTGGACAGCGAAGACCCCGGCCTGGAGCTCTTCCTCAGGGACTGCTGGGGCACCCTTGGCCCCCAGCCCACACACCCCATCACCTGGCCCATCATTCAGGACAGCTGCGAGCTGCAGGAGGACGAGTACCGCACTGTGTTCCACCGCGTCCGCGCCGGCTCCACGTTGGCCTTCCCTCAGCACCACAAACGCTTCGAGGTCAAGACCTTTGCCTTCGTCAAACCCGAGACCACAAAGCTGCTCAATCACCAGATCTACTTCCACTGCTCTGTGATCCTGTGCGACACCGCTGCACTGAGGACCGACGAAGCCTGCAGTGGAGACTGTATACCGCACAGGCAGAGGAGAGGGAGGCGATCCGGGTCTGAGGCCAAACCGGGCATGGTGGTGTCGGCGGGATCCATCGAACTCCTCCCTCTGAACGGCGTTGGCAAGAATGCACTGGtaaCGATTGCCAACCTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10920 lncRNA downstream 255222 52553919 ~ 52554373 (-) True G8833
TU10916 lncRNA downstream 440132 52369239 ~ 52369463 (-) True G8829
TU10876 lncRNA downstream 605915 52203194 ~ 52203680 (-) True G8795
TU10852 lncRNA downstream 641054 52168340 ~ 52168541 (-) True G8776
TU10845 lncRNA downstream 646513 52116880 ~ 52163082 (-) True G8769
TU11032 lncRNA upstream 35045 52856706 ~ 52858452 (-) False AMCG00004529
TU11031 lncRNA upstream 36100 52857761 ~ 52859035 (-) False AMCG00004529
TU11107 lncRNA upstream 280240 53101901 ~ 53104836 (-) True G8981
TU11129 lncRNA upstream 326104 53147765 ~ 53147974 (-) True G9002
TU11147 lncRNA upstream 360290 53181951 ~ 53183364 (-) False AMCG00004551
AMCG00004526 mRNA downstream 26233 52738138 ~ 52783362 (-) True AMCG00004526
AMCG00004525 mRNA downstream 75790 52726785 ~ 52733805 (-) True AMCG00004525
AMCG00004524 mRNA downstream 144368 52623406 ~ 52665227 (-) True AMCG00004524
AMCG00004523 mRNA downstream 410424 52353372 ~ 52399171 (-) True AMCG00004523
AMCG00004522 mRNA downstream 472989 52317631 ~ 52336606 (-) True AMCG00004522
AMCG00004529 mRNA upstream 28822 52850483 ~ 52871113 (-) True AMCG00004529
AMCG00004533 mRNA upstream 77098 52898759 ~ 52911726 (-) True AMCG00004533
AMCG00004534 mRNA upstream 105700 52927361 ~ 52931681 (-) True AMCG00004534
AMCG00004532 mRNA upstream 142552 52964213 ~ 52967709 (-) True AMCG00004532
AMCG00004540 mRNA upstream 175451 52997112 ~ 52999812 (-) True AMCG00004540
TU10836 other downstream 738009 52068053 ~ 52071586 (-) True G8761
TU10834 other downstream 743713 52065526 ~ 52065882 (-) True G8760
TU10795 other downstream 855063 51953664 ~ 51954532 (-) True AMCG00004505
TU10541 other downstream 2084242 50723867 ~ 50725353 (-) True G8542
TU10487 other downstream 2136220 50671066 ~ 50673375 (-) True G8501
TU11033 other upstream 37381 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 37381 52859042 ~ 52860438 (-) False AMCG00004529
TU11035 other upstream 37381 52859042 ~ 52871546 (-) False AMCG00004529
TU11026 other upstream 77899 52899560 ~ 52911752 (-) False AMCG00004533
TU11054 other upstream 125151 52946812 ~ 52951387 (-) True G8937

Expression Profile