RNA id: TU11031


Basic Information

Item Value
RNA id TU11031
length 205
lncRNA type sense_over
GC content 0.63
exon number 3
gene id AMCG00004529
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52850483 ~ 52874108 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGGAGAAGGTTGACTGGAGCAAGTTCATCGCTGTCAACAGGGCCACGGCGCACCCGCACTATGACCCCGACGGCACCACCTACAACATGGGCAACTCCTACGGCAAGCAGGGGTCGCTGTACAACATCATCCGGGTCCCCTTAGAGAAAGGGGCGGCGGGCGAGACCCTGGAGGGGGCGCAGGTGGTGTGCTCCATCCCAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10920 lncRNA downstream 303388 52553919 ~ 52554373 (-) True G8833
TU10916 lncRNA downstream 488298 52369239 ~ 52369463 (-) True G8829
TU10876 lncRNA downstream 654081 52203194 ~ 52203680 (-) True G8795
TU10852 lncRNA downstream 689220 52168340 ~ 52168541 (-) True G8776
TU10845 lncRNA downstream 694679 52116880 ~ 52163082 (-) True G8769
TU11107 lncRNA upstream 242866 53101901 ~ 53104836 (-) True G8981
TU11129 lncRNA upstream 288730 53147765 ~ 53147974 (-) True G9002
TU11147 lncRNA upstream 322916 53181951 ~ 53183364 (-) False AMCG00004551
TU11190 lncRNA upstream 422016 53281051 ~ 53284971 (-) True G9048
TU11216 lncRNA upstream 634460 53493495 ~ 53493710 (-) True G9074
AMCG00004528 mRNA downstream 36100 52809595 ~ 52821661 (-) True AMCG00004528
AMCG00004526 mRNA downstream 74399 52738138 ~ 52783362 (-) True AMCG00004526
AMCG00004525 mRNA downstream 123956 52726785 ~ 52733805 (-) True AMCG00004525
AMCG00004524 mRNA downstream 192534 52623406 ~ 52665227 (-) True AMCG00004524
AMCG00004523 mRNA downstream 458590 52353372 ~ 52399171 (-) True AMCG00004523
AMCG00004533 mRNA upstream 39724 52898759 ~ 52911726 (-) True AMCG00004533
AMCG00004534 mRNA upstream 68326 52927361 ~ 52931681 (-) True AMCG00004534
AMCG00004532 mRNA upstream 105178 52964213 ~ 52967709 (-) True AMCG00004532
AMCG00004540 mRNA upstream 138077 52997112 ~ 52999812 (-) True AMCG00004540
AMCG00004539 mRNA upstream 147364 53006399 ~ 53008624 (-) True AMCG00004539
TU10836 other downstream 786175 52068053 ~ 52071586 (-) True G8761
TU10834 other downstream 791879 52065526 ~ 52065882 (-) True G8760
TU10795 other downstream 903229 51953664 ~ 51954532 (-) True AMCG00004505
TU10541 other downstream 2132408 50723867 ~ 50725353 (-) True G8542
TU10487 other downstream 2184386 50671066 ~ 50673375 (-) True G8501
TU11033 other upstream 7 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 7 52859042 ~ 52860438 (-) False AMCG00004529
TU11035 other upstream 7 52859042 ~ 52871546 (-) False AMCG00004529
TU11026 other upstream 40525 52899560 ~ 52911752 (-) False AMCG00004533
TU11054 other upstream 87777 52946812 ~ 52951387 (-) True G8937

Expression Profile