RNA id: AMCG00004532


Basic Information

Item Value
RNA id AMCG00004532
length 2194
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00004532
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52964213 ~ 52967709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTCGGCCGCACACACTCGGCTGCAGGTAAGAAGCTCATTGCAGCTCCAAATCCTCTTTCACCTGACAGGTTTCTGTCATAATACAAGTGGTTGCTTACATCGAAGGGAAATTGCAAGCTCTGCCTTGCCAGGTCCATGTCCCCTCAGGGATCTCAGGGAGATGGGGTCTCAGATTTATGAATGATGGCTATAGAAAAGAGGTTTCCAATAGCGTCATTCATGTAGTTTTTCTCATTTGCTTCAAAATAGCTTTTAAAGTTAAAGGCTTTTCTTCAGTTGATTTCCACGTCTGTCGAAAGAAAGTGTTAGACTTGGGAAGGCTTGCCTATGGTCGAATTCTCTTGAACCAGATGAGATCTTGGAGAGGGTGATTTTCAGAGTGAAGACTGCACAgtaaccatttatttttgtccttctgtttcaaaggaaaagacaaacatGCACCTGAAAATCGTGATCCTCGCTCTGACCTTTGCCGTTGTGGCAGGCGTCAGAACTGCATTGTGGGATTACCTCAATGAAGGAGCCAATCAGGTCTCAGACAAGAGCCAGCAAACTGAAATCACCAAGGAATCGAATGGGCTGTGGAAGAACCATCTAGAGAAAATCAACCTCTACTCTCAGGACTTCCAGGAGCTACACCACAAGCTGAGCCTGGACTCGGAGAAGCTGCGGGTGCGCTTGATGCGGGAACTCCACGAGCTCAGGGAGAAGTTCTCACCATATAGCCACCAGCTGCAGCACGAGGGGGCCCAGATCCGGGACCGCCTGGCCCCCTACGCCCAACGAATGCAGGGCGTGTTCAACCGCAACACCCAGGAGCTCTGCAGTCACCTCAACACCTACATCCGGGGACTGGAGGTCAAGGCCGATGCACCCCAAGGAGACGCCCCCTACCAGGAAGTGCTACAGAGGATCGAGCAGGCGCTGGACCACAGCAACCAGAAACTGGGACCCTACCTGGAAGAGTTCAGGGTGCAGACAGCCAGGGCGGTCGGGGAGCTCCGAGAGGGGGTGCCTCCTTCGTCCACTGAGGAAGAGCTGCAGCAGCATTTGCAGGCTGTCTCTGACAGGCTGGTCCAGAATGCAGAAGGGTTCAGAGCTGGCCTCCAGGGCCGGGCTGGGGAGCTGCGGGAGGTGCTGGCCCGGCTCCTGACGTCCGCTCGGCCTCTGGGGGAAGAGTTGTCGCATAGTGTGGCCCGCTTCTGTCAGGACTCCTCCTCACAGGCCCAGCGGTTCAGCGCAGGGCTAGAGCAGCAGCTACAAGAGTTGAGCCCGGCCAGAGCATCTGTTCCCCTGGTGGAGGACTTCTCCGCCAAACTCAGCGCCCTGCTAGCGGAGATCCAGCAGAACCTGAACTGAGGTGACCAGAGCAGCGGGAGACCAAGGTGTACGTTGGCCAGGTTGTCCTGGTCATTGCTCAAAACCAGTTCAAACTCGCGGACTGAATTTAGTATCAACATGCAACATGAGAGTGCCATCTTCCCTATAGGGTATCTGTAGGTGGCTTCTTGTGCTGGCCTTGGCAGAATGTGATGGAACATGAGCCCCCAGTGTGAGTGTGACTGTGAGCAGGCAACCCAGCATGCACTGCTTCACCCAACATGCGCTGCGGTTGTGACTGCTTCCTTCAGGGTTTCATGGATTGTGACCTGGTCTTACACAGCGCTTCATGCGATTGTAAATTTGAGACCTGTTGTTGGGTGAACTGCAAAGACATCCTGTTTTGATGGTGTTGTGCCCTGTGACTGGCTTAttgttgtgttgtactgtgctggatgttcatattttccttgttttgttttgatggtGTTTATTTCATGTGAATGCATGAAGACTTTTGGtgttgcaataaaataaagaagaaatatgtaaataataacaaaactgtccagaatcattttattttgaatgatttagtCATGTGGACCAAGCATTTACATTTCACTTGAGTGAGAAGACCCCAGTGCCAGATACACAGACACTACCAGGAGATAAACAGTCTCTTAATTTCAACAGTTGTGTATTGTATGAGTTTTCCCACTGTATTACAGcagaattaattgaattataaaaCTTGTGTTTATGAGAAATGGAAGAGCATTACagctattattgttgttattactgTGGACAGAAATACTGATAATTTGTATATCTGtctatttacaataaatacgctgttttattca

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0001525 angiogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11031 lncRNA downstream 105178 52857761 ~ 52859035 (-) False AMCG00004529
TU11032 lncRNA downstream 105761 52856706 ~ 52858452 (-) False AMCG00004529
TU10920 lncRNA downstream 409840 52553919 ~ 52554373 (-) True G8833
TU10916 lncRNA downstream 594750 52369239 ~ 52369463 (-) True G8829
TU10876 lncRNA downstream 760533 52203194 ~ 52203680 (-) True G8795
TU11107 lncRNA upstream 134192 53101901 ~ 53104836 (-) True G8981
TU11129 lncRNA upstream 180056 53147765 ~ 53147974 (-) True G9002
TU11147 lncRNA upstream 214242 53181951 ~ 53183364 (-) False AMCG00004551
TU11190 lncRNA upstream 313342 53281051 ~ 53284971 (-) True G9048
TU11216 lncRNA upstream 525786 53493495 ~ 53493710 (-) True G9074
AMCG00004534 mRNA downstream 32532 52927361 ~ 52931681 (-) True AMCG00004534
AMCG00004533 mRNA downstream 52487 52898759 ~ 52911726 (-) True AMCG00004533
AMCG00004529 mRNA downstream 93100 52850483 ~ 52871113 (-) True AMCG00004529
AMCG00004528 mRNA downstream 142552 52809595 ~ 52821661 (-) True AMCG00004528
AMCG00004526 mRNA downstream 180851 52738138 ~ 52783362 (-) True AMCG00004526
AMCG00004540 mRNA upstream 29403 52997112 ~ 52999812 (-) True AMCG00004540
AMCG00004539 mRNA upstream 38690 53006399 ~ 53008624 (-) True AMCG00004539
AMCG00004544 mRNA upstream 149351 53117060 ~ 53150892 (-) True AMCG00004544
AMCG00004553 mRNA upstream 184162 53151871 ~ 53162352 (-) True AMCG00004553
AMCG00004552 mRNA upstream 196964 53164673 ~ 53178444 (-) True AMCG00004552
TU11054 other downstream 12826 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 52461 52899560 ~ 52911752 (-) False AMCG00004533
TU11033 other downstream 90105 52859042 ~ 52874108 (-) False AMCG00004529
TU11035 other downstream 92667 52859042 ~ 52871546 (-) False AMCG00004529
TU11034 other downstream 103775 52859042 ~ 52860438 (-) False AMCG00004529
TU11148 other upstream 217517 53185226 ~ 53188021 (-) False AMCG00004551
TU11317 other upstream 718707 53686416 ~ 53689999 (-) False AMCG00004567
TU11319 other upstream 718707 53686416 ~ 53822222 (-) False AMCG00004567
TU11324 other upstream 718707 53686416 ~ 53856565 (-) False AMCG00004567
TU11409 other upstream 1065755 54033464 ~ 54035522 (-) False AMCG00004575

Expression Profile