RNA id: TU11026


Basic Information

Item Value
RNA id TU11026
length 3532
RNA type TUCP
GC content 0.51
exon number 5
gene id AMCG00004533
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52898759 ~ 52911752 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTCTCTTTCCTCCGCCGACTATTTTAAGTACTTCCGGGTGAGCGCGGTGCGTGACCTTGTTCGTTCAAGATGGCGGCCCTGGTGAGGATGAGCTCCCTCTGCCACAGAGGCGTCAAACCTCTGTTCTTCAATAATTCTCTCCTTGCTCGGCCGCTGGTTTCTGCGAGAACGAGCCGTGATCCCCCCACTCAGCTGGCTGCGCGTATCCATCTGTCCCCTGCACACTGCGCTGGCTCCAAGGCCGCATCGCTCCACTGGACGAGTGAGCGGGCGCTGAGTGCCGTCCTGCTGGGCCTGCTGCCCGCTGCCTATCTGTACCCCGGCCCTGCCATGGACTACTCCTTGGCAGCTGTGCTCACCCTGCACGGGCACTGGGGACTGGGCCAGGTGTTGACCGACTACATCCACGGAGAGGCGTCCGTTAAGGTGGCGAAAGCCGGCCTCTTTGCCCTCTCTTCCCTCACGTTCGCGGGCCTGTGCTACTTCAATTACCACGACGTGGGAATCTGCAAAGCCGTGGCCATGCTCTGGAGCATCTAGCTCATGGactgggggttggggggtggggggcggagATGTCTGTCACTCAGCTAATTGTAAACTATTTCCCGGATCATCTTtgaaatctatatatatttttctgtgacACATATAAACAGCTTTCATTTCCTTGccccattttttaattttaattaatttctggattgttttgtgttctgaAGGAGTGACATTCAGTGTTCGGTCTTCTGTCACAGcttaattgtgtaatttactTGTGATCTGTGGTGAGCAGGAAACTGGAGACAAACATTTCTTTGAGCTTTCTGACTAGGACGTAAATCACCCAGCTCTTGGATCTAGCGAAGGGGGGATGGAGTCTTAACCTTTAGTAGTATTAAAATGAGGTGTAAATAGAGCCCTCCCAAAATTAGAAACCCGAGTGATCATTAAGATACCAAGACGAGTTGAGAAGCTCTGTGCATGTATGCAGAGTTCACAAATATTTGGCATTAGCTCACTGGTGGTGGTTTCACTCTGCCACCTCTCTACCTAGTGCTTTGCAGGCTTCCCAGCAGTGTGGACACTTGAGGTTTGGTTAAGCAAGGCAGCGCACTGTGCTACTCATCTCAGGATTAGGAAACCCCCATGCTTTGTTTATATGCCCTTGCTGATgacattagagagagagagcccatTTGTGGCTTTCTAAAACAATTGCTACAGGATTGTTTTCCTGGTATGCGGCCTGAGAAAAAGGTGACCTAAGCTGTGCACGTTTCCTGTGGTATAACCAGCTTGGATTGAACGCGGTAAGTCATATTCATGCAGCGAGACGCTGCCCGATTTATACAAGAGCCCTATTACATTTGCAACACTTAAAGAAACGGTTCACAGGCCTGCATCCACATTCACCTATGGCTACAGGATATTAGATTAAAAACAGCAAAGTCCCTTGTTTGATCTTTGTTAAGCACAGACAATgatctgttaaaaataaatacattaaagccTTTCCCTCTTTATCCTGTTTCACTGAGAAGTGGTTTTCTGTACCATCTTATTCAGTCGGTGAGCTCCAGAGATCTTCAGCAATTGACAAAAACATTCGATTGCACTGACCAATCTGTAGCTTGTTTAGGTGGGGTCAAAACTGTCAATCAGTTCTTATAATTGTTCAAAACAACCTCTGcattagtttttattaattaaacatccaATTGCATTTGTTAGTGTTCCTTATCTGTTCATATCCAGCCTCCTGTTTTCTGCTctctctgaaaatgaaatgtagtaattattgtttatttatttggctggtATGTTTATCCATAGACATTTAACACGGGGGTCCATTTATACAGTGGTTCTGATTCATCACTGAGTGCTGCTCGGCCTAGCCTGGGGGGAGaagatatatttagaaaaatcgCCCCGGGAGTGGAAACTGATCTTTGAcaggaaatataaaaattaaataaaaaaacacatgtagtGCATTCTGACCTCACGGTGATTTCCAGCCCACCAGCAAGCCTCCAGAGATGTCTGTGGTTTGGTGATCTATTCCAACATGTCAAATGCATCCTGTTTCCATTTGTCATTTAATATACTTTCTGTGCCAGGATGCGTCTAATTATTCAGTCCgaagacagatttatttttttaatagactCTTTTCTGCTAATCTGCAgatttttatgatgatgatgattattattagtaataataagaTTGACCTGTTGGCCAGCATCTGTTATTACTAGAAAGTCGCAAATAAAGTCTAGAGCAAAAAGATTAACCGAAATGTTTCAAGAGAGGCCAGTGCTGCAGAGATGCCTTTGttgtgaacaaaataatttccaCACTTTAAATCTGTCCTTCAGTGGCTTTCAGATGCACTGCATTTAGAAAGAGCTTACATCTGCATGTTTTGCCTGCATCTAACCTGTGCTGCAATAGTATTGTCTATTTGAAAACGTACACAGTTTATGATGGTGCACACCGATGTCCCTGCACTGTTGCATGTGTACTTGGGTGAGTTTACTCAAAGTACACATTTTGTTCTTGCCTGGAGGCCTTTTTCACATAAGGGACTTCCCaccttttatttaatacaagGAACAAGTGTGATTTGTAGGGCCAAAAACCTCAGCTACAGCCACAGTCTCTCCTTTCCTCAGCTGTGTGATCAGGTCGGGTGTTAGTCAGACAGACAGCGCCTCAAGGACGTGATCTTGTGACGAAGTTCAAGATTTCCACACCTGCTAAATGTTTTTCAGCTCATTTTCGCGTCACTGTGATCTAGTGAGTCACGGATGCTTTCTTGCAGTGTGTTCCTTGTTAATTCTAGTTTTGGCTTGTTTTCCTCCTGGCTCTGGACGTGCACCCACACACATTGTTCAGATAGTTTGCACACAAGTCACTGTGTGGTCGTGTGCTGCATGTGatctttcttctcctttcttACCCTGCAGAGGGGCCTTGCTAAATTACTGTGAAAATCCTATAAACctgtaatactttgttttatacCGACCCCTTTGTATATAGTGTTGGTGACATCTACATCTAATGAGTTAAATCCTACTAgttttacttaaaaatacaaaatatatatccatatacTGATGAGCTTGATACAAAAgggtttattgtttttcagcaaCTAGTTTCTTAagagacaaatgcacatcttaCATTAGCttgagtttatttaaatttgactttttacatCTGAGTTGAAGTATAAGgcaattaaacattaacagaCAGTTACCTAAAAACATCTAGACTACAAAACTAGCAAAGATGAAAAgcatgACACTGGctttcattatttaaacaaatgtttttgtattgggGTACATACAgaatcaataaattaaacaatcagTGTATGCTTTTTTTGTCCCACCTTTGACAGTTTTCCAATTTGTGTGCACAATATAAAACGCTCTGAAGGACAGAATTATGCCATATACAGTGAGCTGACCATACACTCCCACTGTAACTATTTCACAGATggaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11031 lncRNA downstream 40525 52857761 ~ 52859035 (-) False AMCG00004529
TU11032 lncRNA downstream 41108 52856706 ~ 52858452 (-) False AMCG00004529
TU10920 lncRNA downstream 345187 52553919 ~ 52554373 (-) True G8833
TU10916 lncRNA downstream 530097 52369239 ~ 52369463 (-) True G8829
TU10876 lncRNA downstream 695880 52203194 ~ 52203680 (-) True G8795
TU11107 lncRNA upstream 190149 53101901 ~ 53104836 (-) True G8981
TU11129 lncRNA upstream 236013 53147765 ~ 53147974 (-) True G9002
TU11147 lncRNA upstream 270199 53181951 ~ 53183364 (-) False AMCG00004551
TU11190 lncRNA upstream 369299 53281051 ~ 53284971 (-) True G9048
TU11216 lncRNA upstream 581743 53493495 ~ 53493710 (-) True G9074
AMCG00004529 mRNA downstream 28447 52850483 ~ 52871113 (-) True AMCG00004529
AMCG00004528 mRNA downstream 77899 52809595 ~ 52821661 (-) True AMCG00004528
AMCG00004526 mRNA downstream 116198 52738138 ~ 52783362 (-) True AMCG00004526
AMCG00004525 mRNA downstream 165755 52726785 ~ 52733805 (-) True AMCG00004525
AMCG00004524 mRNA downstream 234333 52623406 ~ 52665227 (-) True AMCG00004524
AMCG00004534 mRNA upstream 15609 52927361 ~ 52931681 (-) True AMCG00004534
AMCG00004532 mRNA upstream 52461 52964213 ~ 52967709 (-) True AMCG00004532
AMCG00004540 mRNA upstream 85360 52997112 ~ 52999812 (-) True AMCG00004540
AMCG00004539 mRNA upstream 94647 53006399 ~ 53008624 (-) True AMCG00004539
AMCG00004544 mRNA upstream 205308 53117060 ~ 53150892 (-) True AMCG00004544
TU11033 other downstream 25452 52859042 ~ 52874108 (-) False AMCG00004529
TU11035 other downstream 28014 52859042 ~ 52871546 (-) False AMCG00004529
TU11034 other downstream 39122 52859042 ~ 52860438 (-) False AMCG00004529
TU10836 other downstream 827974 52068053 ~ 52071586 (-) True G8761
TU10834 other downstream 833678 52065526 ~ 52065882 (-) True G8760
TU11054 other upstream 35060 52946812 ~ 52951387 (-) True G8937
TU11148 other upstream 273474 53185226 ~ 53188021 (-) False AMCG00004551
TU11317 other upstream 774664 53686416 ~ 53689999 (-) False AMCG00004567
TU11319 other upstream 774664 53686416 ~ 53822222 (-) False AMCG00004567
TU11324 other upstream 774664 53686416 ~ 53856565 (-) False AMCG00004567

Expression Profile