RNA id: AMCG00004534


Basic Information

Item Value
RNA id AMCG00004534
length 1488
RNA type mRNA
GC content 0.58
exon number 6
gene id AMCG00004534
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52927361 ~ 52931681 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGTTCGGTCCCTGCAGTGGCGATGTGGACGACATCCTCATGAAGTGCTTCAAGGACCCGGACTACGATGAGCTGCTGGACATTATCCAGCACGGGCTGCCCCGAACACAGACCCCCCGGCACATTGCCATTGTGGGGGCAGGAATGGCCGGGCTGACTGCCGCCAAATTCCTGCAGGATGCGGGGCACAAGGTAACCATAATTGAAGCCAGTGGCCGCATTGGGGGCAGGGTGCACACGTACCGGGACAAGAGCGGAGGCTGGTACGCTGAGCTGGGCGCTATGAGGATTCCCAGTTTTCACAGAATCCTCCTGGCCTTCATTGAAAAGATGCAACTGAAAGTCAACCGCTTCATCCAGGACGACATCAACACCTACTACTACGTCAACGGAGTGAAATCCCGCACGTACCACGTGGAGAGGAACCCGGACATCCTGAAGTATCCCGTCAGCGACAGCGAGAGGGGGAAGTCCGCCAGCCAGCTGTATAATGACTCTCTTTCCAAGATTAGAGACGACTTGAAGAAGAGCGGCTACAACTGTAAGAAAGTCATGGAGAAGTACGACTCATACTCTGTCAAGGATTATCTGGTGCAAGAGGGCAATCTGAGCAAGGGTGCCCTGCAGATGATCGGGGACATCCTGAACGAGAACGGCTTCTTCTACACCGCGCTGACCGAGTCGATGAGGATTCAGACTGACATCAGTGACAACACCACGTACTTTGAGGTCACTGGTGGCTTCGATAACTTGACGAACACTTTCTACGACGTCCTGAATTGCACCATCCTCCTCAACTCCAAGGTGAAGAGCATCAGACAAACCCACAGGGACGTGACGGTGAACTTCCAGGATCTGCGGAACCCCAGGGGCTTGTCCAGCATCACCGCGGACTACATCCTGATGACGGCCACCGCCAAGGCCTCCCTGTTTGTTGACTTCCAGCCGCCGCTGTCTCAGCCGAAGCGGGAGGCCCTGCGCTCGGTGCACTACTCCAGCTCCACCAAGGTCATCCTGGGCTTCAGCCAGCGCTTCTGGGAGCAGGAGCACATTAAGGGTGGCAAGACCATCACCGACCTGCCCTCGCGCTTCATCTACTACCCCAGCCACAGCTTCCCGGGGACCAACAGTGGGGCGATCCTGGCTTCCTACACTTTCTCGGACGAGGCGGCGCTCTTCCAGGGCATGAGCGACGAAGACCTCCAGGCCATGGCCCTGGACGACCTGGTCGCAATCCACGGGGAGGGTATCAGGTCGCTCTGGACCGGTGGCCTGGTGAAGAAGTGGGGCATCGATCCCTTCAGCCTGGGGGCCTTCGCCATCTTCACCCCGTACCAGCAGACGGACTACGCCTCGCTCCTGTCCCAGAGCGAGCGCCGGGTCTACTTTGCGGGGGAGCACACTGCCACCCCGCACGGCTGGATCGAGACGGCCATGAAATCTGCCCTGAGGGCCGCCAGGAACATCCACAATCGCAAAGACTAG

Function

GO: NA

KEGG:

id description
K03334 IL4I1; L-amino-acid oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11031 lncRNA downstream 68326 52857761 ~ 52859035 (-) False AMCG00004529
TU11032 lncRNA downstream 68909 52856706 ~ 52858452 (-) False AMCG00004529
TU10920 lncRNA downstream 372988 52553919 ~ 52554373 (-) True G8833
TU10916 lncRNA downstream 557898 52369239 ~ 52369463 (-) True G8829
TU10876 lncRNA downstream 723681 52203194 ~ 52203680 (-) True G8795
TU11107 lncRNA upstream 170220 53101901 ~ 53104836 (-) True G8981
TU11129 lncRNA upstream 216084 53147765 ~ 53147974 (-) True G9002
TU11147 lncRNA upstream 250270 53181951 ~ 53183364 (-) False AMCG00004551
TU11190 lncRNA upstream 349370 53281051 ~ 53284971 (-) True G9048
TU11216 lncRNA upstream 561814 53493495 ~ 53493710 (-) True G9074
AMCG00004533 mRNA downstream 15635 52898759 ~ 52911726 (-) True AMCG00004533
AMCG00004529 mRNA downstream 56248 52850483 ~ 52871113 (-) True AMCG00004529
AMCG00004528 mRNA downstream 105700 52809595 ~ 52821661 (-) True AMCG00004528
AMCG00004526 mRNA downstream 143999 52738138 ~ 52783362 (-) True AMCG00004526
AMCG00004525 mRNA downstream 193556 52726785 ~ 52733805 (-) True AMCG00004525
AMCG00004532 mRNA upstream 32532 52964213 ~ 52967709 (-) True AMCG00004532
AMCG00004540 mRNA upstream 65431 52997112 ~ 52999812 (-) True AMCG00004540
AMCG00004539 mRNA upstream 74718 53006399 ~ 53008624 (-) True AMCG00004539
AMCG00004544 mRNA upstream 185379 53117060 ~ 53150892 (-) True AMCG00004544
AMCG00004553 mRNA upstream 220190 53151871 ~ 53162352 (-) True AMCG00004553
TU11026 other downstream 15609 52899560 ~ 52911752 (-) False AMCG00004533
TU11033 other downstream 53253 52859042 ~ 52874108 (-) False AMCG00004529
TU11035 other downstream 55815 52859042 ~ 52871546 (-) False AMCG00004529
TU11034 other downstream 66923 52859042 ~ 52860438 (-) False AMCG00004529
TU10836 other downstream 855775 52068053 ~ 52071586 (-) True G8761
TU11054 other upstream 15131 52946812 ~ 52951387 (-) True G8937
TU11148 other upstream 253545 53185226 ~ 53188021 (-) False AMCG00004551
TU11317 other upstream 754735 53686416 ~ 53689999 (-) False AMCG00004567
TU11319 other upstream 754735 53686416 ~ 53822222 (-) False AMCG00004567
TU11324 other upstream 754735 53686416 ~ 53856565 (-) False AMCG00004567

Expression Profile