RNA id: AMCG00004540


Basic Information

Item Value
RNA id AMCG00004540
length 1203
RNA type mRNA
GC content 0.54
exon number 8
gene id AMCG00004540
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52997112 ~ 52999812 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGCTGGCATACCTCTCTCTGAGCACCGTCCTCCTGCTGACACGTGGGTCCACAGCTCAACTGTTCAACTGCTCCGCTGAATTCAACCGGGTCCCGGATAATCAGGACCTGAAGGTGGACTGCGGCCCCCAGGTCATCAATCTGGAGGTGAACCTCTGCACGGCCCAGTACGCTGGCTTTGACCCCACAGGCCTCGCCCTCAACAGCCAACACAACATCTCCCAGTGCGCCGGCACCATTGACACTGACGTCAGCCCCCCCGTCATCCGATACAGGCTGTCCATCACCCAAGATAATGTTTGCGCGCAGTCATTTCAGGCAAGTTTGctcttctcctctcccctcctctcttcaTACGATCCAGGAAAAGACACTTCAGCTGGGATTGACTTTGGCTCATGTATCGGGCCCACTGTATATAGAGAGGTGGATGCTGCCTTCCCTAATGACGAGTCTATTGTAAACGAGGGCGCAGGCAACGGGATCTTCAGCTCCTTCTCCAACATCCAGTCGGTGCTCATCGCCGGCTATATCGACACTCCGAAATCGTCCCAGGGGATCATCAGCTACTCGACTGACCTGTACTACTACTTCACCTGCCGCTACCCCCTGGAGTACTTCCTCAACAACACACAGATCATCACgTCCTCAGTGTCATTAGCCATGAGTGACAACAATGGCTCGTTCATCAGCACCCTCAGCATGAAGCTGTACAATGACTCCAGCTACTCTTCTCCACTGACTGTCCCAGACATCGGCATACCACTGCAGACTCTGATCTACGTGGAAGTCAGTGCCAATAACCTGACTGAGAATTTTAATGTGTTGCTGGACCACTGTTTCGCCACACCCTCGCCTTTCAACGCAACCGGCGATGATGAGCACAACTTCTTCATTGGGACCACCATAGTGAAGAACGGTGTAGGCCAGAAATCGCAGTTCTTCTTCGAGGCGTTCCGCTTCGTACAGCACAGGGACAAGCCGATCTCCACGTTGTACCTGCACTGCATCACCCGGCTGTGCCAACCCCAAGACTGCCAGAACCTGCTGGCGGTGAGCTGCCCCTCTCCCATCTCCTCCATCCCCTCCATCCCCTCTTCCCTGTCTCCTCTCATCTCTCGCTCATCCCATGACTCTACCGACGCCCCACACTTTAGTTACTTGTACACAGCCctgctgtatttaaacaagCAGCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11031 lncRNA downstream 138077 52857761 ~ 52859035 (-) False AMCG00004529
TU11032 lncRNA downstream 138660 52856706 ~ 52858452 (-) False AMCG00004529
TU10920 lncRNA downstream 442739 52553919 ~ 52554373 (-) True G8833
TU10916 lncRNA downstream 627649 52369239 ~ 52369463 (-) True G8829
TU10876 lncRNA downstream 793432 52203194 ~ 52203680 (-) True G8795
TU11107 lncRNA upstream 102089 53101901 ~ 53104836 (-) True G8981
TU11129 lncRNA upstream 147953 53147765 ~ 53147974 (-) True G9002
TU11147 lncRNA upstream 182139 53181951 ~ 53183364 (-) False AMCG00004551
TU11190 lncRNA upstream 281239 53281051 ~ 53284971 (-) True G9048
TU11216 lncRNA upstream 493683 53493495 ~ 53493710 (-) True G9074
AMCG00004532 mRNA downstream 29403 52964213 ~ 52967709 (-) True AMCG00004532
AMCG00004534 mRNA downstream 65431 52927361 ~ 52931681 (-) True AMCG00004534
AMCG00004533 mRNA downstream 85386 52898759 ~ 52911726 (-) True AMCG00004533
AMCG00004529 mRNA downstream 125999 52850483 ~ 52871113 (-) True AMCG00004529
AMCG00004528 mRNA downstream 175451 52809595 ~ 52821661 (-) True AMCG00004528
AMCG00004539 mRNA upstream 6587 53006399 ~ 53008624 (-) True AMCG00004539
AMCG00004544 mRNA upstream 117248 53117060 ~ 53150892 (-) True AMCG00004544
AMCG00004553 mRNA upstream 152059 53151871 ~ 53162352 (-) True AMCG00004553
AMCG00004552 mRNA upstream 164861 53164673 ~ 53178444 (-) True AMCG00004552
AMCG00004551 mRNA upstream 179210 53179022 ~ 53189393 (-) True AMCG00004551
TU11054 other downstream 45725 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 85360 52899560 ~ 52911752 (-) False AMCG00004533
TU11033 other downstream 123004 52859042 ~ 52874108 (-) False AMCG00004529
TU11148 other upstream 185414 53185226 ~ 53188021 (-) False AMCG00004551
TU11317 other upstream 686604 53686416 ~ 53689999 (-) False AMCG00004567
TU11319 other upstream 686604 53686416 ~ 53822222 (-) False AMCG00004567
TU11324 other upstream 686604 53686416 ~ 53856565 (-) False AMCG00004567
TU11409 other upstream 1033652 54033464 ~ 54035522 (-) False AMCG00004575

Expression Profile