RNA id: AMCG00004551


Basic Information

Item Value
RNA id AMCG00004551
length 6048
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00004551
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53179022 ~ 53189393 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAAGCAGAGAGCGCTCCTGTGTTGATCGAGGCGCCTCACTTGACCCCTCCAGCACACTCGGGCCTCTGTGCGCATTGTGGGAGGAACGTCGAGAGCGTGTGTCCGTCTTCGTGCCCCGCCCCCGCCGTGCTCCCCTGCAGCTTTCCGGAGTGGAGCCGTGCGTGGGCCGTGAGTGGCAGCAGCTGCGCCTGTGCCCGCCTGTGCCCGCCTGTGCCCGCCTGTGCCCGCCTGTGCCCGCAGCTCCTCCAGAGGCGACTACAGTCCCCGACTCAAGGCGAGTGTGGGATCAAATCGTGGCCGCGTCGTGTCCGCTGCTCCGGGCTGAAGAGCATCAGCCAGACGAATTCCACTACTTCAATGTTAAGAAGATGGACCCCAGCGGTGCAGCGGTGAGGGCCCCTCGAGAGTTGCTGCTGCTCGGGGAGGGCAACTTCTCCTTCTCCACAGCTCTGTGCCTGGCAGCTGGGGATGGTGCCCGGATCACTGCCACCTCCTACCACCCTGAGGACGCCACCCTGCAGCAGGACGGCGCAGCCGAGAACATCCAGCAGCTTCGAGACAGCGGGGTGGAGGTTTTTTTCGAGGTGGATTGCACCCGGCTGACAGATTACGAGGCTCTGGCCCAGCGGCAGTTCGACTGCATCATCTTCAACTTCCCTCACTGTGGGAGGAAGGCCGGCGTCAAGAAGAACCGCAGCCTGCTGGCCAAGTTCTTCCTCAGCTGTGCCCAGGTGCTGAGAGAGACTGGGGAGGTCCACGTGGCGCTGTGCAATGGGCAGGGGGGCACCCCCGCAGACCAGCCGATTAGAGAGTGGCACAACAGCTGGCAGGCCGTTGCAATGGCGGCCGAGGCGGGCTTCATCCTCAGCGAGATCTGCCCCTTTGATAACGCCAGCTTCCGTGGCTACAGGAGCACAGGGTACAGGAGCCAGGACAAATCCTTCCACGTTGAAGGGGCTCTGACCCACATCTTCACTCGCAGTCTTCCCTGCACTTCCTCCCAGAGCGTCCACATGGAAGCCCAGCTGGGCAGAGAGAGCATTTGCTTTGAGGTGCCGGAGGAGCTGAACGACTGCATCAACAGGAATTTCCTGGGCAAGCATTCTCGGCACCCCGTTCACatcctgcaggagctgctgctgaGGGACCTGCGCTCACCCTGGCCCATGCAGCGGTCCGAGAGCCCCCTGCCCGAGCTGTTCAGGAACTCCCCCGGGCTGCTCCAGGACTGCGGGCCTGATGGGTCTCCTTCCAAAGTGTTCTGGATCAGACCGACTGAGACGAGGactgagggggaggaggggagagactCGCAGGCTGCTGACATCTCTGCCAATGACGGCCCCCAGGACGGGACCACCAAAGGCTACGGCCTCCGTCCTTCCCTGCTCCTCCACGCACGGGAGATCTCCCAGTGCCTGGACTTCTCCCCTGGGATTCTCCACGTCCTGAGCGGCACGGTCTTCCAGAGGGTTCTCGTGTCCAAGACCACCTCCCCCGCCTTCCACCAGCTGCTCCTCGTGGGGGCCTTCCGGTCAGACGCCCAGCCATGCCAGCTGCTCCAGCGCTGCCTGGAAGCAGCCCTGGCAGCGGCCGAGAGAGTGGCCCCGAATGGTGCCGCAGTGGGGCAGCCGGTCTCCTTCAAGAGGGAGTTGGGGGGCTCAGAGCCGCAGCTGTTGGTGAGTTTCAGGGGCCTCCCTAAAGTGGGGCAGATTGGAGTCCTCCCTGCCCAAGGAGGCCCGTCTCCAGACCTGCGGGTCTACACGGCCACCCTCAACCTGGACCTGCTGGCCTGCCAGGTGTTCTCCATTCCCGACTGGAGGCTGCTGTGGAGCCGGGACCCCCGCTTCCAGGCGCACTTCCTCCACGAGGAGCTACGGCCCTTTTGCAGCTTCTCCCTCTACCCCCCCGCCTACTCGCACGACGTCAGCTTCTGGGTGGAGCCGGAGAGCTTCGATGAGCTGGACTTTCACGCTCTGGTGCGGCAGGTGTCTGGGGGTACAGTGAGGGAGGTGGCCCTGGTGGACCGGTTCCGGCACCCGCACATGGGCCACGCCAGCCTCTGCTACCGGCTGACCTACCAGGCCTGCGACCGCGCCCTCTCCTACAGCCAAGCACTCGGGATGCAGCTGCAGCTGCGCAAACTGCTGCCCCAGCGCCTGCAGGTCACTCTGAGGTAGAGAGGAGCCGCAGGCAGCAAGCGGGGAGGGTTCACGAGGGGCCGCAGTGCTGCAGGACGTGGGAGATCTCTGCTTTTACCACATATTAGGACCTGTGTGAATACTAGGGCTCTTTCTGACACACTCGCTGCATAATTAGACCAATGAAGTACCTGACAGGTGCGTTGGGTTGCGATGCAGAATTTGCTGCAGCCCGCATAGGATTACTATCTGATCACCTGTGGGCACAGAGAGGTTGCTGTGGCCCATAATGTTTCAGAACATCCTCATTATTCCGGTGCATGTCTTTGATACACCCAGCTCCTTAGTTAGATCattgaattaatcaaataacCAGCAAGCTGTTTGTGCCAAAATATTGCACAGCAATGGATTGGAAGGGCTTGACAGTTACTTGACAATAACTGACTGTTTCCTAATGAAGTCATGAGGACTGGCCAACTAAAGTTTTACTACAGTATGAGTTTTTCCTGTCTCTTTTTCTCATCGCTGGCTGGCTGTGTGTAACATACACATTGCAGTGTTACAATGTGGATTAATAATGCTGCACCATTTTAAACTTTGTGCCAGAATGTGATTCCCCCATTGCACGTCCTTCCAGTacagatttgactttttaatatCGTtggtatgttttgttgttgtagttacAATGGCctgtgaaataatacaaaaaataaaatcaaagcaaCGACAGAATTCTGGGGCACACGTGCTGCTGAAAATGTATCCAGTAAAAGACCACGAAAAGGTTAACGGCCACTCGAACCTCCTGCCCAGCAGCACTGTACCCACAGAGCATAAAAGAACATGGATAATTTCACAGCTTGGCATCTATGCAGATGTTACAATCCTTCTTCTGCAACCTTTGTTTTTCATCTAATTGTTGAGATCTTATTTACAGAGACTCTCAGTACTCTGTGCACTTGATACATTGCACTTATGtggtaagttgccctggataagggcgtctgccaagaaataaaaataataataatacagtaatccATTCTGGAATAGCTGTATGTGACCAGTTTGTGATTTTCACTCTCCAGAGAGTTTTACATTtggagtgaaaaacaaaacccaacaaaaacaacgtgtgcatttttaaaaagaaaaaaagtgctgCTGTAATTGGGATGGTGTAATTGCTctagtgatttgttttaatacatgtctatatttgtttactttaataGTGGTATTGAATTAACTGCATTAAGCATCTGCTACACTGCTTATGAACAGCAACTGCCTTGTACAATTACAGTGTCAAAAGGAACCTTACACAAAAGGCAGCAGATCGACTGTAAAGCAGCTCTTAACTGTGGTAATTACAGTCCCATGAGAAAACCAAGctgatttgtttgtctttaaaatcGAGCAAGGTTCCCAGCAACTTTGAGCCCCTAGGCTGTGACAGGCTGTTTTATGTTGAGTTTTGAATCTGGTGAATGTCTGCGGCTAAGAAAGCAGCCACTGACCAAATCCACGAGTATAGGACTCTCCACGCTGTTTACACTGTATTATAGACCCCTACGCCACACTGCTATCTGCTGGGATGTCAAATAGCCATAATGTTGTGTACTTTATTGCAAACGTTCTCCGTTTAATCTCAGCTGTTGTAAGCGTTTACAAAGTGACTGTACAGACAATGTAAGTTACAATCAAAACAGTCGGGCAGAGACCCCACTCCCCATTGCCGCACAATGTCCGGGGTTAGTGTGCAGCTTCCCGTGCCAACTAGGGTCTGCTCTACATTAATTTTGCCAACTTTGTCTCCCATtctgtttgaaatatattattgtgcagtttttatatatatctatatgtgacaatttatataatatatatatatatatatatatacacacacacacacataatcaaTTTTCATGGTGTCCTAATAATTGTCAGAAACTATATATTACAGGCTTTGATCAGAACTGGTGTCAGAAGTGCAGAGTTGACGTGGGGTCGGCTGTGGGTTGTTTTTTCACACAGGATCGGTTTCCAACACCAGCAGTGCTTGTGAATGTGTTCTGCAGAGAGCCCCTGAGAGCGTGTGGGCTAATGGAAAGAGGTGATTGAAGtgctgtgcgtctctgtgtaaAACAAGACCGGTGAAATCCAGGGCACGTTGAATCAAAAGCTCTCTGAATGTACTGAAGCTCTTTCTACTGCTAGACGTTTTTATAAAttgatgtgttttcatttgtgtcaGTGATTGGGGAACTATAGATTCAGAATATTTCTGTATGGATATTGATATGTGACTGGATTTAGGTCTCTATGTCCACAACTTCTAGAAAGGCAATGCAAATTAAAGGTAGGTTGCTCTATTTTCTGTTCGGGCCTGTCTGCTTGCCAGTGCCGGTCGGCAGGGATGTGACCCTTTCTGTAACTATGGCTAAATGAGGTTTGGTGTGTCTTTCGTACCTGGCTGAATTTAAcctttttaatccttttatgCCACTTTGGTTGTGTGGcgtctgttttaaaatgagttttCATAGTTGTATCTTTTGCGTTGCTGCAGTGAAGACCCGTTTGGTCTTTTGCCGAAGGGAACTGGGAGTGCTTCGCGTGGTCGTGCGCTTTTCTTTCGTGTCCGTTTGTTGGATTAACGAACAGAGCAGTGCTTGTTTCTAAAGCTACACATTTCGCACGAACACCAGTTTCAAAGGACATGCAGATGGATTTCCCAGTTGGCATAAAGCACCTTTTGTATTCTGAGCTTGCACACGCAAATATCTTCCTGCCTATAGTCACCACATATGATTTATGGCGATATGAATGTCAGTTATATATGCTGCTGGGCAGGGGGAACAGGGCAGCCTTCATGGCTGGAACACGACTGCAATGCGGCCATCCTGAAATGATAATGTAAAACATCGCATTATAGGTTACACTACATTACAGAAATTAAGTCAAACATGGTTGTGTTGCACTTGTGATCGCTAACTAGTGACGAttgttttctttgcatattACTCTGATGGTGTGATTGTACTGCAGCCACAGTAATTCTCAGGTTTACCTGCATATTTGCATTAGATATGCCTTGCTCGCTgtctcgctcgctcgctcaaAGCAACTGTACTGTAATCTTTGTGAAGGAAAATAAGGCAGATACAGTGTTGGGAAACCTGTATATTAAAATGCCAATGTTCACACAGAAGTCGAGGAAATTAAACCAGTATGTTCGATAACAGAGAAAGCTCATTCCTTGAGAAGATGTATGTTTTTGTCTGTAATTCAGGTCCAAAATCCATGCTGTGGCACACAGTGAAAGATACGACTGTGGGTTTgaataattggaaaataaacttGTGTGCACTGTGTTTGCACTTAAAAAACCTTGTTTACAGTGGGCTAAGACACTTACTTGTAgacaatgaatgaatgattaaaCCCAATTGAAGTGTCTGTGACTCAAAAGATTATATGCTGTATAAAATACAGAGCAAAAGCATTCTAAGATGGTATAAGTGTGTTTACTTACATTTGCCTAAAATATTTTGGggcattttatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtgtgtatttatttatttattttactaacaaGACCTAACAGTACTGACAGTAGTTTTCCCACAAACTTTTTAACAAGTGAGCTGATGTACAACAAAACTTGACATTGagcatcacttaaaaaaaaaagaaaccaacgAATAAAAAATGGCTTTGCTTGACTGTATCAACTCAGTGCAGAAGTTTCAAGTCGTCTATTTTGCTTTGTACTTTTAAAACGTGTATTTTTTCCCAATGCTCTGTGTAAATCTTTgagaattatttataaaataataaaagttcaACAGTTTTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11129 lncRNA downstream 31048 53147765 ~ 53147974 (-) True G9002
TU11107 lncRNA downstream 74186 53101901 ~ 53104836 (-) True G8981
TU11031 lncRNA downstream 319987 52857761 ~ 52859035 (-) False AMCG00004529
TU11032 lncRNA downstream 320570 52856706 ~ 52858452 (-) False AMCG00004529
TU10920 lncRNA downstream 624649 52553919 ~ 52554373 (-) True G8833
TU11190 lncRNA upstream 91658 53281051 ~ 53284971 (-) True G9048
TU11216 lncRNA upstream 304102 53493495 ~ 53493710 (-) True G9074
TU11312 lncRNA upstream 472991 53662384 ~ 53663246 (-) True G9141
TU11322 lncRNA upstream 497023 53686416 ~ 53774852 (-) False AMCG00004567
TU11329 lncRNA upstream 504811 53694204 ~ 53695507 (-) True G9145
AMCG00004552 mRNA downstream 578 53164673 ~ 53178444 (-) True AMCG00004552
AMCG00004553 mRNA downstream 16670 53151871 ~ 53162352 (-) True AMCG00004553
AMCG00004544 mRNA downstream 28130 53117060 ~ 53150892 (-) True AMCG00004544
AMCG00004539 mRNA downstream 170398 53006399 ~ 53008624 (-) True AMCG00004539
AMCG00004540 mRNA downstream 179210 52997112 ~ 52999812 (-) True AMCG00004540
AMCG00004550 mRNA upstream 6877 53196270 ~ 53202552 (-) True AMCG00004550
AMCG00004556 mRNA upstream 95901 53285294 ~ 53290739 (-) True AMCG00004556
AMCG00004557 mRNA upstream 108063 53297456 ~ 53298097 (-) True AMCG00004557
AMCG00004559 mRNA upstream 337475 53526868 ~ 53533837 (-) True AMCG00004559
AMCG00004558 mRNA upstream 384137 53573530 ~ 53586212 (-) True AMCG00004558
TU11054 other downstream 227635 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 267270 52899560 ~ 52911752 (-) False AMCG00004533
TU11033 other downstream 304914 52859042 ~ 52874108 (-) False AMCG00004529
TU11317 other upstream 497023 53686416 ~ 53689999 (-) False AMCG00004567
TU11319 other upstream 497023 53686416 ~ 53822222 (-) False AMCG00004567
TU11324 other upstream 497023 53686416 ~ 53856565 (-) False AMCG00004567
TU11409 other upstream 844071 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 1170705 54360098 ~ 54364267 (-) False AMCG00004590

Expression Profile