RNA id: AMCG00004552


Basic Information

Item Value
RNA id AMCG00004552
length 1875
RNA type mRNA
GC content 0.60
exon number 13
gene id AMCG00004552
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53164673 ~ 53178444 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCCAGGGGGTTCCGGCAGAGAAACAGACGAGGAAGCAAGCAAGATGCAAACAACGTGAACCCCAACACGGGCAGCGACCCCCGCATCAGAGAAGAGAGCAAAGCGTCGGAGGACAATAAAACCTCCGAGGTTAAGAATGACCAATGCTCTAAGTCTCTGTGCCCTCCCTGCCCTTGCCCTTCCTGCCTGGGTAGCTGCCCCCCCGAGCCGCACTCGTCCCCCTTCACCCAGCCTGTCTCCTGCTGCAGGGGCTCCAGCCGGGCCGGGCAGGTGTGGGCGCCCGAGGGCTCCACGGCCTTCAAGTGTCTGGTGTCGGCCCGCTTCTGCGCCGCGCTGCTCAGCAACATCTCCGACTGTGACGAGACCTTCAACTACTGGGAGCCCACCCACTATCTGCTGTACGGGAAGGGCATGCAGACCTGGGAGTACTCCCCTACCTACGCCATCCGCTCCTATGCCTACCTGTGGCTCCACGCGTTGCCAGCCTGCTTCCACGCTAGAATACTGCAGACCAACAAGgTCCTGGTATTCTACTTCCTGCGCTGCCTGCTGGCCTTCACATGCTGCGTCTGTGAGCTCTACTTCTACAAGGCCGTTTGTAAGAAGTTCGGGCTCCACGTTGGCCGTCTCATGCTTGCGTTCCTGGTGCTGAGCGCAGGGATGTTCACGTCGTCGGCAGCCTACCTGCCCAGCAGTTTCTGTATGTACTGCACTGTGGTGGCGATGACCGGCTGGTTCCAGGACAGGCCGGCGGTGGCCGTGCTGGGGGTGGCGGCCGGCGCCATCGTGGGCTGGCCATTCAGCGTCCTGCTGGGGCTGCCCATCGCCTTTGACCTGCTGCTGATGAAGAGGAAGTGGAAGAGCTTCATTACCTGGGCCCTGGTGGCACTGGTGCTGTTTCTGGCTCCCGTAGTGGCAGTGGACAGTTACTACTATGGCAAGCTGGTGGTCGCCCCTCTGAACATCGTCCTGTACAACGTCTTCACTCCCCACGGGCCCGATCTGTATGgcacCGAGCCCTGGCATTACTACTTTGTAAATGGATTCCTCAACTTCAACCTGGTGTTTGTGCTGGCCCTGCTGTCGCTGCCCCTCACCGCGCTGATGGAGGCTCTGCTGCAGCGCTTCAATGTGCAGAACCTCGGCCGCCCATACTGGCTCACCCTGTCGCCCATGTACATCTGGATGCTGGTGTTCTTCACTCGGCCCCACAAGGAGGAGCGCTTCCTGTTTCCCATCTACCCCCTCATCTGCCTGTGCGGAGCTGTGGCCCTGTCTTCACTACAGAAGTGCTACCACTTCCTGTTCCAGAGGTACCGCCTGGAGCACTACACCATCTCCTCTCACTGGCTGGCCCTGGGCTCGGTGCTGGTGTTTGCTGTGCTGTCCCTGTCTCGCTCCATTGCTCTCTTCAGAGGTTACCACGCTCCTCTGGATTTGTACCCAGAGTTCCACCGCATTGCCAAGGACCCCACCATCCACACCGTGCCGGAGGGGCGGCCcgtcaatgtgtgtgtgggcaAGGAGTGGCACCGTTTCCCCAGCAGCTTCCTCCTGCCTGACAACTGGCAGATGCAGTTCATCCAGTCGGAGTTCCGTGGCCAGCTGCCCCAACCCTACGACAAGGGTCCCCAGGCCACGCGGATCGAGCCCCCGCACATGAATGACCAGAACCTGGAGGAGCCCTCTCGATACGTAAGTACCCCTGCCACCCTTGCCGGCACTGACGACAATCTCGCCGCCCGGAAGACCTCGGACACAGAGCAGATAAACACTGCAGCCCAGGATCAGGGGTGTGAATACTCATTTAGTCCTCTTAATGAAGCTGCCCTGACTAAGGTTAATCTAAGGTTATTAAGGATCCATTGA

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K03846 ALG9; alpha-1,2-mannosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11129 lncRNA downstream 16699 53147765 ~ 53147974 (-) True G9002
TU11107 lncRNA downstream 59837 53101901 ~ 53104836 (-) True G8981
TU11031 lncRNA downstream 305638 52857761 ~ 52859035 (-) False AMCG00004529
TU11032 lncRNA downstream 306221 52856706 ~ 52858452 (-) False AMCG00004529
TU10920 lncRNA downstream 610300 52553919 ~ 52554373 (-) True G8833
TU11147 lncRNA upstream 3507 53181951 ~ 53183364 (-) False AMCG00004551
TU11190 lncRNA upstream 102607 53281051 ~ 53284971 (-) True G9048
TU11216 lncRNA upstream 315051 53493495 ~ 53493710 (-) True G9074
TU11312 lncRNA upstream 483940 53662384 ~ 53663246 (-) True G9141
TU11322 lncRNA upstream 507972 53686416 ~ 53774852 (-) False AMCG00004567
AMCG00004553 mRNA downstream 2321 53151871 ~ 53162352 (-) True AMCG00004553
AMCG00004544 mRNA downstream 13781 53117060 ~ 53150892 (-) True AMCG00004544
AMCG00004539 mRNA downstream 156049 53006399 ~ 53008624 (-) True AMCG00004539
AMCG00004540 mRNA downstream 164861 52997112 ~ 52999812 (-) True AMCG00004540
AMCG00004532 mRNA downstream 196964 52964213 ~ 52967709 (-) True AMCG00004532
AMCG00004551 mRNA upstream 578 53179022 ~ 53189393 (-) True AMCG00004551
AMCG00004550 mRNA upstream 17826 53196270 ~ 53202552 (-) True AMCG00004550
AMCG00004556 mRNA upstream 106850 53285294 ~ 53290739 (-) True AMCG00004556
AMCG00004557 mRNA upstream 119012 53297456 ~ 53298097 (-) True AMCG00004557
AMCG00004559 mRNA upstream 348424 53526868 ~ 53533837 (-) True AMCG00004559
TU11054 other downstream 213286 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 252921 52899560 ~ 52911752 (-) False AMCG00004533
TU11033 other downstream 290565 52859042 ~ 52874108 (-) False AMCG00004529
TU11148 other upstream 6782 53185226 ~ 53188021 (-) False AMCG00004551
TU11317 other upstream 507972 53686416 ~ 53689999 (-) False AMCG00004567
TU11319 other upstream 507972 53686416 ~ 53822222 (-) False AMCG00004567
TU11324 other upstream 507972 53686416 ~ 53856565 (-) False AMCG00004567
TU11409 other upstream 855020 54033464 ~ 54035522 (-) False AMCG00004575

Expression Profile