RNA id: AMCG00004557


Basic Information

Item Value
RNA id AMCG00004557
length 642
RNA type mRNA
GC content 0.64
exon number 1
gene id AMCG00004557
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53297456 ~ 53298097 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGTGCACTTCCAGGGCTGGGAGGTGCTGTATGACGACGACCAGCACCTGTCGGCGGAGCAGCAGCCCAAAGCGGGGCACCTGTACACGATGTACCACGGCACCACGGTCGCCCAAGCCCAGAGCATCATACAGAGCGGCTTCCAACAGTCTGCGGACGGCATGCTGGGGGCGGGGGTGTACGTGAGCCGGGACCAGAAGAAGGCCAAGCGCTACCCCCTTAATGCCCCCCCTGCCGACCGGGTCGTGCTGAAGCTGAGTGTGGACACGGGGAAGGTCAAGCGCATCGACACCGACAACCACCCCCTGCAGAAAACCTGGCATAGTCAGGGCTACGACACGGCCTGGGTGCCCCCCAACTGCGGCATGAAGGCTGTGCCCAGCGGCCTGGAGGAGGACTGCGTGTGGGACCCCCAGCGGGTGCAGGTGGTGGACATCGCCCTTGCCGACAGCACCGTGCTGCCTCAGCTCAAGGCACTGGTCGCCGCGCAGCCGAAAAGCAAGAGCAGAGCCCAGAACGGCCCGGCCAACTGCCTGCTGTGCAAGAGAGCGTCCTCCGCCCACCTGACACAGCCCTGCTGGGGCTGCGGCAAGAACATCTGCACCTTCATGACCAAGCATGTGTGTAAAACAGTGTAG

Function

GO:

id name namespace
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11190 lncRNA downstream 12485 53281051 ~ 53284971 (-) True G9048
TU11147 lncRNA downstream 114092 53181951 ~ 53183364 (-) False AMCG00004551
TU11129 lncRNA downstream 149482 53147765 ~ 53147974 (-) True G9002
TU11107 lncRNA downstream 192620 53101901 ~ 53104836 (-) True G8981
TU11031 lncRNA downstream 438421 52857761 ~ 52859035 (-) False AMCG00004529
TU11216 lncRNA upstream 195398 53493495 ~ 53493710 (-) True G9074
TU11312 lncRNA upstream 364287 53662384 ~ 53663246 (-) True G9141
TU11322 lncRNA upstream 388319 53686416 ~ 53774852 (-) False AMCG00004567
TU11329 lncRNA upstream 396107 53694204 ~ 53695507 (-) True G9145
TU11330 lncRNA upstream 399279 53697376 ~ 53700585 (-) True G9146
AMCG00004556 mRNA downstream 6717 53285294 ~ 53290739 (-) True AMCG00004556
AMCG00004550 mRNA downstream 94904 53196270 ~ 53202552 (-) True AMCG00004550
AMCG00004551 mRNA downstream 108063 53179022 ~ 53189393 (-) True AMCG00004551
AMCG00004552 mRNA downstream 119012 53164673 ~ 53178444 (-) True AMCG00004552
AMCG00004553 mRNA downstream 135104 53151871 ~ 53162352 (-) True AMCG00004553
AMCG00004559 mRNA upstream 228771 53526868 ~ 53533837 (-) True AMCG00004559
AMCG00004558 mRNA upstream 275433 53573530 ~ 53586212 (-) True AMCG00004558
AMCG00004561 mRNA upstream 289178 53587275 ~ 53605416 (-) True AMCG00004561
AMCG00004562 mRNA upstream 309710 53607807 ~ 53611269 (-) True AMCG00004562
AMCG00004560 mRNA upstream 320325 53618422 ~ 53627882 (-) True AMCG00004560
TU11148 other downstream 109435 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 346069 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 385704 52899560 ~ 52911752 (-) False AMCG00004533
TU11035 other downstream 425910 52859042 ~ 52871546 (-) False AMCG00004529
TU11034 other downstream 437018 52859042 ~ 52860438 (-) False AMCG00004529
TU11317 other upstream 388319 53686416 ~ 53689999 (-) False AMCG00004567
TU11319 other upstream 388319 53686416 ~ 53822222 (-) False AMCG00004567
TU11324 other upstream 388319 53686416 ~ 53856565 (-) False AMCG00004567
TU11409 other upstream 735367 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 1062001 54360098 ~ 54364267 (-) False AMCG00004590

Expression Profile