RNA id: AMCG00004567


Basic Information

Item Value
RNA id AMCG00004567
length 2169
RNA type mRNA
GC content 0.52
exon number 18
gene id AMCG00004567
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53686416 ~ 53863369 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCAAATCAACAGTGAAGGTGTGGGCTTACCGTCAGGACATGGAGAGGTGTATTCAGACACGGCCTGCTCACCTACAAGACATAAGGACCACATAGTGAAGGACAGACAGGATGAATCCAGACAGGAGTTTGAAGTTCAGAATGACCATGTTGGTGTTGTCCCTCGGGCCGGCGTACCTGTTGGGTACGCCGGCCCGAGGGACAACACCAACATGGTCATTCTGAACTTCAAACTGCTGTCTGGATTCGTCCTTAAAGATACACAGATAAGAATTtatTCACGTCTCACATTAGTCCCCCTTACCTTGCCGCTGATTTCACAAGATCGGGTGAAGCGAATTGACAAAGAAGACGGCCATGTGATTCTGTATCTGGATGAGATTCTAGCCAAAGGGGCCATTTCCTTGTATGAGCACATGAAGAGTAACATAGAGCAGCACAGCAGATGGGTAAAGATTACAGCTGGTTGGTCAAGGGAGCTCAGTAACACTTTGCAGTGTTCAAATCAGATCCTACCTGACTTGGTGCATCTTGCCATTGCAGTGAAATTAGGCAGGGTTCCCTTCAGGCTGCCTGTGGATTACACACTGGCTCCCATTGCCCAGATGCTGGTCTATACTGTGCTGCCAGGAGAGAAAGTCATAGCAGACAGCTTCAACTTCCAAGTGGAGAAGTGTTTGCCCAGTGAGGTGTCCCTCAAGTTCTCGTCCCCCGAGGTGCTCCCTGGAGGTCAGAGTGCCGTGACTCTCAGCTCTCAGCCCGGCTCTCTGTGCTCCCTCAAGGCCATCGATCAGagtgtgctgctgctggacaGGAAGAATGAGCTGACCATTGACTTGATCTACAAACTGCTGCCTGTCCAGAAGGGTGAAGAATTCCCCTATTCCTTAGAAGACCCCCGCAGCTGTGTGCTAGTGAGACAAAGAAGGTCATATTTCAGTAATCGAGAGAATCAACCAAAGGATGCTTATACAATTTTTAAGTTGTCAACAATACTATGCAAAGTCAACAGAGTAGAATATGCAGTGCCAATGCCGATGATAGGAAGCTCTGGCAGAAGACCGAAGGAGACAATTCGAACATTCTTCCCTGAGACATGGATCTGGGATTTGGTCCCAGTGAATGTGACTCCGGCCAAGTCCTCAGACTACACTCTGGAGCCCTGCAAAGGGTATGAGTACACTTCCTGTCTGTGTGCCAACGAAGCAAAGACCTTCCATTGGACTCTGGTGCCTTCAGCCCTTGgATCGGTGAACATATCAGTGAGTGCAGAAGCGATACACACCGAGACCATCTGTGAAAATGAGCTGGTGACTGTGCCTGAACAAGGCCACATTGACACCGTCATTCGCCCTCTGCTGGTAGAGCCTGAAGGGATGCAAAAGACCATCAGTTACAACTGGCTGTTGTGCCCAAAAGGGACCGTGGAGAAGGAGGAGGTCCAGTTGCAGCTCCCAGAAGTCATTGTGGAGGGATCTGCCCGAGCCTCCATCTCCGGTGGAGTGAGTGACGAGGTGACCCTGACTGCCTACATCGCTGCCGCCATGTTGGAACTGAACACCTCTGTGACGGAGCCCGTATTAAACAGCAGTCTGTCATGCCTGAGGGCTGCAATCCACAACCTGACCAACACTTACGCTGCTGCCCTGCTCGCCTACACCTTCACCCTGGCTGGGGAGGAGGACACCAGGGCCAGCCTTCTCGCCAAGCTGGATGTGCAGGACACCACTGAGGCTGACTCCCTGTCAGTAGAGATTAACTCCTATACTCTGCTGGCACTCCTCAGCCACCAACCCCTGTCCTCCTCTGACCTGGGCCGCGCCTCTAGGATCGTCAGCTGGCTGATCAAACAGCAGAATCCCTATGGAGGATTCTCTTCCACACAGAGCTCGAGCACAGTGACGGTGCGGTCAACAGGGGGAGAACACCACCACTTCACCTTGGACCAAAGCAACAGCCTGCTGTACCAGGAGAAGGAGCTTCAGGACCTCCTGGGGGTGTACAGTGTGGAGGCAGAGGGCACAGGCTGTGCTTCGATCCAGATCGCTCTCCACTACAACATCCCCCCCCCTGCCGACTTTGTCAACTTCAACCTGACCTTGAAGGCTTATCGGCAATGCAACACTAGCAGCGATAACAGAGACCTCAGACTCTTAGCCAGCTTA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11339 lncRNA downstream 1474 53794078 ~ 53795344 (-) True G9153
TU11322 lncRNA downstream 21966 53686416 ~ 53774852 (-) False AMCG00004567
TU11333 lncRNA downstream 74696 53721242 ~ 53722122 (-) True G9149
TU11330 lncRNA downstream 96233 53697376 ~ 53700585 (-) True G9146
TU11329 lncRNA downstream 101311 53694204 ~ 53695507 (-) True G9145
TU11347 lncRNA upstream 34058 53864951 ~ 53865675 (-) True G9161
TU11415 lncRNA upstream 255682 54086575 ~ 54087038 (-) True G9217
TU11462 lncRNA upstream 374660 54205553 ~ 54206013 (-) True G9261
TU11477 lncRNA upstream 427670 54258563 ~ 54273287 (-) True G9273
TU11586 lncRNA upstream 611488 54442381 ~ 54450341 (-) False AMCG00004598
AMCG00004560 mRNA downstream 168936 53618422 ~ 53627882 (-) True AMCG00004560
AMCG00004562 mRNA downstream 185549 53607807 ~ 53611269 (-) True AMCG00004562
AMCG00004561 mRNA downstream 191402 53587275 ~ 53605416 (-) True AMCG00004561
AMCG00004558 mRNA downstream 210606 53573530 ~ 53586212 (-) True AMCG00004558
AMCG00004559 mRNA downstream 262981 53526868 ~ 53533837 (-) True AMCG00004559
AMCG00004569 mRNA upstream 47382 53878275 ~ 53905023 (-) True AMCG00004569
AMCG00004572 mRNA upstream 79484 53910377 ~ 53928613 (-) True AMCG00004572
AMCG00004571 mRNA upstream 104851 53935744 ~ 53949364 (-) True AMCG00004571
AMCG00004573 mRNA upstream 133092 53963985 ~ 53965707 (-) True AMCG00004573
AMCG00004570 mRNA upstream 148852 53979745 ~ 53988395 (-) True AMCG00004570
TU11317 other downstream 106819 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 608797 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 845431 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 885066 52899560 ~ 52911752 (-) False AMCG00004533
TU11035 other downstream 925272 52859042 ~ 52871546 (-) False AMCG00004529
TU11409 other upstream 202571 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 529205 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 745747 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 745747 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1536692 55367585 ~ 55420058 (-) True G9604

Expression Profile