RNA id: TU11319


Basic Information

Item Value
RNA id TU11319
length 823
RNA type TUCP
GC content 0.51
exon number 6
gene id AMCG00004567
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53686416 ~ 53863369 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGAAATGACCTGTGACTTGTCATTGTTTTACAGGTACACATATGGGAAGCCAGTGTCTGGAAGAGTGCAGATTGAATTATGCCCCATTTCTAGACAACGTTATTTAAGGGAAAGAAACTGCCTGTCTGTGTCAACTGAAGTGGACAAGACTGGCTGCGTTTCTCACACTTTCAACATCACGTTGTTCAAGGACATATCATTCGATGACCTTGAATTCAAAGCTGAGGTCCAAGAAGATGAAACGGGTGTATCAATGAGCAAAACAACTTCCTTAACTTACACCAGAACAATGGGCAAAGTCAGTTTTGTGGACACACCCAAGTTCTATCAGAAGGGAGATGTGTTTGAAGGCAAGGTCAAGGCAGAGAGGGCAGATTCCTCGCCTTTAGTGAATGAGATGGTCTATGTGCTGGATTCTACATCTAGCCCATTTCAAATCATGCTGAATGTTACCACTGACAGCAAAGGGATCGCACACTTCTCTCTCAACACGTCCGACTGGACCTCAGAGACCATCAGTCTCATGGCCAGCTTCCAGAAAGTTGAGAGACCAAGATGGGATTCCCCACATGGTCCACATTATGAAAGCGAGACCCACACAGTCTCCCAGGTTGAGAAGCCACATGGCAGCTACCTCTCCATCGAGGGCACTGACACGAGCCTCCCATGTGGGGAGGAAGCTTTAATCAGCATCTACTATGCTGTGACTGAGGTGGACCTACAGACTGACAAGAGATCTCTTGATCTGTTCATCCTGATTCTAGCCAAAGGGGCCATTTCCTTGTATGAGCACATGAAGGTGGATCTTCCCGAACATTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11312 lncRNA downstream 23170 53662384 ~ 53663246 (-) True G9141
TU11216 lncRNA downstream 192706 53493495 ~ 53493710 (-) True G9074
TU11190 lncRNA downstream 401445 53281051 ~ 53284971 (-) True G9048
TU11147 lncRNA downstream 503052 53181951 ~ 53183364 (-) False AMCG00004551
TU11129 lncRNA downstream 538442 53147765 ~ 53147974 (-) True G9002
TU11341 lncRNA upstream 1089 53823311 ~ 53824486 (-) False AMCG00004567
TU11347 lncRNA upstream 42729 53864951 ~ 53865675 (-) True G9161
TU11415 lncRNA upstream 264353 54086575 ~ 54087038 (-) True G9217
TU11462 lncRNA upstream 383331 54205553 ~ 54206013 (-) True G9261
TU11477 lncRNA upstream 436341 54258563 ~ 54273287 (-) True G9273
AMCG00004560 mRNA downstream 58534 53618422 ~ 53627882 (-) True AMCG00004560
AMCG00004562 mRNA downstream 75147 53607807 ~ 53611269 (-) True AMCG00004562
AMCG00004561 mRNA downstream 81000 53587275 ~ 53605416 (-) True AMCG00004561
AMCG00004558 mRNA downstream 100204 53573530 ~ 53586212 (-) True AMCG00004558
AMCG00004559 mRNA downstream 152579 53526868 ~ 53533837 (-) True AMCG00004559
AMCG00004569 mRNA upstream 56053 53878275 ~ 53905023 (-) True AMCG00004569
AMCG00004572 mRNA upstream 88155 53910377 ~ 53928613 (-) True AMCG00004572
AMCG00004571 mRNA upstream 113522 53935744 ~ 53949364 (-) True AMCG00004571
AMCG00004573 mRNA upstream 141763 53963985 ~ 53965707 (-) True AMCG00004573
AMCG00004570 mRNA upstream 157523 53979745 ~ 53988395 (-) True AMCG00004570
TU11148 other downstream 498395 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 735029 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 774664 52899560 ~ 52911752 (-) False AMCG00004533
TU11035 other downstream 814870 52859042 ~ 52871546 (-) False AMCG00004529
TU11034 other downstream 825978 52859042 ~ 52860438 (-) False AMCG00004529
TU11409 other upstream 211242 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 537876 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 754418 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 754418 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1545363 55367585 ~ 55420058 (-) True G9604

Expression Profile