RNA id: TU11321


Basic Information

Item Value
RNA id TU11321
length 830
lncRNA type sense_over
GC content 0.47
exon number 4
gene id AMCG00004567
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53686416 ~ 53863369 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCATTTTCACCTTCAGTACATTGTAACTGCAAATAGGTTTATCAACGTTAGATCTGGAAACACAAAGTAGCTGACATAACTCTTTGCTTGGCCTGGAAGACAGTTTGTATTCTTGTTCTTTCTCTCAGGAGCCCGTATTAAACAGCAGTCTGTCATGCCTGAGGGCTGCAGTCCACAATCTGACCAACACTTATGCTGCTGCCCTGCTCGCCTACACCTTCACCCTGGCTGGGGAGGAGGACACCAGGGCCAGCCTTCTCGCCAAGCTGGATGTGCTGGACACCACTGAGGCTGACTCCCTGTCAGTAGAGATTAACTCCTATACTCTGCTGGCACTCCTCAGCCACCAACCCCTGTCCTCCTCTGACCTGGGCCGCGCCTCTAGGATCGTCAGCTGGCTGATCAAACAGCAGAATCCCTATGGAGGATTCTCTTCCACACAGgaCACAGTGGTAGCCCTGCAGGCCCTGTCTCTCTATGGGGCCGTGGCATTCAACAAAGAGAGCTCGAGCACAGTGACGGTGCGGTCAACAGGGGGAGAACACCACCACTTCACCTTGGACCAAAGCAACAGCCTGCTGTACCAGGAGAAGGAGCTTCAGGACCTCCTGGGGGTGTACAGTGTGGAGGCAGAGGGCACAGGCTGTGCTTCGATCCAGATCGCTCTCCACTACAACATCCCCCCCCCTGCCGACTTTGTCAACTTCAACCTGACCTTGAAGGCTTATCGGCAATGCAACACTAGCAGCGATAACAGAGACCTCAGACTCTTAGCCAGCTTAATGTAAGTCCATTTCTCTCAACATCATTCTTGTGTTTGTTAATGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11339 lncRNA downstream 1426 53794078 ~ 53795344 (-) True G9153
TU11322 lncRNA downstream 21918 53686416 ~ 53774852 (-) False AMCG00004567
TU11333 lncRNA downstream 74648 53721242 ~ 53722122 (-) True G9149
TU11330 lncRNA downstream 96185 53697376 ~ 53700585 (-) True G9146
TU11329 lncRNA downstream 101263 53694204 ~ 53695507 (-) True G9145
TU11347 lncRNA upstream 1582 53864951 ~ 53865675 (-) True G9161
TU11415 lncRNA upstream 223206 54086575 ~ 54087038 (-) True G9217
TU11462 lncRNA upstream 342184 54205553 ~ 54206013 (-) True G9261
TU11477 lncRNA upstream 395194 54258563 ~ 54273287 (-) True G9273
TU11586 lncRNA upstream 579012 54442381 ~ 54450341 (-) False AMCG00004598
AMCG00004560 mRNA downstream 168888 53618422 ~ 53627882 (-) True AMCG00004560
AMCG00004562 mRNA downstream 185501 53607807 ~ 53611269 (-) True AMCG00004562
AMCG00004561 mRNA downstream 191354 53587275 ~ 53605416 (-) True AMCG00004561
AMCG00004558 mRNA downstream 210558 53573530 ~ 53586212 (-) True AMCG00004558
AMCG00004559 mRNA downstream 262933 53526868 ~ 53533837 (-) True AMCG00004559
AMCG00004569 mRNA upstream 14906 53878275 ~ 53905023 (-) True AMCG00004569
AMCG00004572 mRNA upstream 47008 53910377 ~ 53928613 (-) True AMCG00004572
AMCG00004571 mRNA upstream 72375 53935744 ~ 53949364 (-) True AMCG00004571
AMCG00004573 mRNA upstream 100616 53963985 ~ 53965707 (-) True AMCG00004573
AMCG00004570 mRNA upstream 116376 53979745 ~ 53988395 (-) True AMCG00004570
TU11317 other downstream 106771 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 608749 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 845383 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 885018 52899560 ~ 52911752 (-) False AMCG00004533
TU11035 other downstream 925224 52859042 ~ 52871546 (-) False AMCG00004529
TU11409 other upstream 170095 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 496729 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 713271 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 713271 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1504216 55367585 ~ 55420058 (-) True G9604

Expression Profile