RNA id: TU11341


Basic Information

Item Value
RNA id TU11341
length 348
lncRNA type sense_over
GC content 0.45
exon number 3
gene id AMCG00004567
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53686416 ~ 53863369 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAACTGTATTGACATGGAATGAGCCATTTCAGAGATGCCTACCTATGCCAGAGAGCTGTTAATGATTGTTATTCTGACCTAACAGGTACGCCGGCCCGAGGGACAACACCAACATGGTCATTCTGAACTTCAAACTGCTGTCTGGATTCGTCCTTAAAGATACACAGATAAGAATTtttcagtatTCACGTCTCACATTAGTCCCCCTTACCTTGCCGCTGATTTCACAAGATCGGGTGAAGCGAATTGACAAAGAAGACGGCCATGTGATTCTGTATCTGGATGAGCTCACAAGGGGAAAAACTTACCACTATCACATCACCATGACCCAGAAGCACCCAGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11339 lncRNA downstream 27967 53794078 ~ 53795344 (-) True G9153
TU11322 lncRNA downstream 48459 53686416 ~ 53774852 (-) False AMCG00004567
TU11347 lncRNA upstream 40465 53864951 ~ 53865675 (-) True G9161
TU11415 lncRNA upstream 262089 54086575 ~ 54087038 (-) True G9217
TU11462 lncRNA upstream 381067 54205553 ~ 54206013 (-) True G9261
TU11477 lncRNA upstream 434077 54258563 ~ 54273287 (-) True G9273
TU11586 lncRNA upstream 617895 54442381 ~ 54450341 (-) False AMCG00004598
AMCG00004560 mRNA downstream 195429 53618422 ~ 53627882 (-) True AMCG00004560
AMCG00004562 mRNA downstream 212042 53607807 ~ 53611269 (-) True AMCG00004562
AMCG00004561 mRNA downstream 217895 53587275 ~ 53605416 (-) True AMCG00004561
AMCG00004558 mRNA downstream 237099 53573530 ~ 53586212 (-) True AMCG00004558
AMCG00004559 mRNA downstream 289474 53526868 ~ 53533837 (-) True AMCG00004559
AMCG00004569 mRNA upstream 53789 53878275 ~ 53905023 (-) True AMCG00004569
AMCG00004572 mRNA upstream 85891 53910377 ~ 53928613 (-) True AMCG00004572
AMCG00004571 mRNA upstream 111258 53935744 ~ 53949364 (-) True AMCG00004571
AMCG00004573 mRNA upstream 139499 53963985 ~ 53965707 (-) True AMCG00004573
AMCG00004570 mRNA upstream 155259 53979745 ~ 53988395 (-) True AMCG00004570
TU11319 other downstream 1089 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 133312 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 635290 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 871924 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 911559 52899560 ~ 52911752 (-) False AMCG00004533
TU11409 other upstream 208978 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 535612 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 752154 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 752154 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1543099 55367585 ~ 55420058 (-) True G9604

Expression Profile