RNA id: AMCG00004570


Basic Information

Item Value
RNA id AMCG00004570
length 2120
RNA type mRNA
GC content 0.56
exon number 15
gene id AMCG00004570
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53979745 ~ 53988395 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCATAATTAATACATGGATGACGCTCCAAATGCTTGGACGCTGAACCGGAGATAGAGGGAACGatcgttttgtttttatagctgTTGGGACTGGCCTGCCGATATGGACCTGGTTGTAATCTGGACCTGCCTCGTCCTGTTCCCTGTGCTCAGGTGTGCTCTCCCACCACCTTGCGACAGTGAGGTGTACTGCCAGGGGGAGCTGCTGAGGCAGGTGCAGGAGGCCAAGCTGTTTGCGGATGACAAGCACTTTGTGGACATGAAGCTGAAAGAGCCCCCAGGGAAAGTTCTGGAAGCTTTCCGGAACCTAACATCCACGgtcCGAGCTGAAGTCCAGGACCGCCCTGAGCTCTACTCCCTGATCTACACCCCCCATCCTCTTATTGTCCCCGGGGGCCGCTTCAGAGAGCTCTACTACTGGGACTCCTACTGGGTGATCAACGGACTGTTGCTGTCGGAGATGAAGGACACGGCGCGGGGCATGATCAGCAACTTCCTGTACCTCGTGGAAAGGTATGGCTTTGTGCCCAATGGAGCCCGTGTGTACTATGAGCGCCGCAGCCAGCCGCCCTTCCTCACCCTGATGGTGGAGAGCTACTACCAGGCCACCCAAGACAAGAGCTTCCTGAGCTTTGCGCTGCCCTTGCTGGAGAAGGAGTATCAATTCTGGATGGAGAACCGCTCCGTCGTCGTGCAGAGCGCTGGGATCAGTCACACTCTGAACCGCTACAGGGTGGAGGCGGGCCAGCCCAGGCCCGAGTCCTACACTGATGACCTGGAGCTGGCTCAGGGGCTGTCCAAAGATGCCCAGGAGAGGCTGTGGGCGGAGCTGAAGGCGGGGGCAGAGTCGGGCTGGGATTTCACCTCGCGCTGGTACATGGCCGAGGGGGGCAGGGGTAGTGGGGGGGCTCTGAGCGACACCCGGACCAGCCACATACTGCCCGTCGACCTCAACGCCCTGCTGTGCCGGAACGAGAGGACACTAGCCTTCTTCTACAAGGAACTGGGCGGTGCTGTGGGACGAGGAGACGGCCTGCTCTCCAACACCAGCCGCCCCGGCTTCTACCCCTCCAACCTGGCCCCTCTGTGGGCACAGTGCTACGCCGAGCCGGGCGCCGGCGAGCGGGCGCTGGAATACCTGCAGGCCAGCGGTGCCCTGAAGTACCCCAATGGAGTGCCCACGTCTCTGTCGGATAGTGGGCAGCAGTGGGACTACCCCAATGCCTGGCCTCCCCTGCAGCACATGATCATAGAGGGTCTGTCCAAGCTGAGCTCAGAGAGTGCTCAGCAGATTGCCCTCGACCTGTCTCAGAAATGGATCCAGACCAACAGGAAGGCCTACAAGACATACCAGGCCATGTTTGAGAAgtatgATGTGAATGGAGATGGCAAGCCAGGAGGAGGTGGGGAGTATGAGGTTCAGCTGGGCTTCGGCTGGACCAATGGGGTGGCCCTGCAGCTCCTGGACCGGTTTGGGGATAGACTGTCATCGGGGGCCACTGCGGTCCTGGGCTCTGGGCTGGGGGTGTGGCTTCTGAGCACCCTGCTGGTCATGTTATGAACTGCAGCCCTGGGCACCACTGACACCCTGCTGGCCTCTCGCTGTGAATTGAAATGACTCTTCCCAGTCACTATACAAGACTTGCCCAATCAGAAATAACTAAGGCAGTTGATGTCCCCTATGAACCCTGTGATGATTGAGTTGCCCTTTTGTGATTAAGTTGTGATTAGAATGCAATTAAACTACTTTTGGTAAAGTCTTCAgctgtgcaataaaataatattttaacaacagGCATGTCAGCCACCCTTGAGGTCTATCGGCTAATCTtgtgtgcattaaaataaatgaattaatgacaAATAGGGCGAGGGGAGGGACACTGTATGTCATATACATGTTTCAAGGCACAGCTGTGAATATATAACAGACATGAAACATTTTGTGTGGTTGATGCGTCCGGCTGTATCTGTTACGATTCACGCCAGGAGTCTGCAGTTTAAATCAGTTTGCTGCAGTCCATTCATCCCTCCACTAGAGGTCCCCAGCCGCCTATACCTGTTTGACCTCTTTTGGGGAACGTCAATACCGTATTACCTAGTAAATAAACGGGTTTCTG

Function

GO: NA

KEGG:

id description
K01194 TREH, treA, treF; alpha,alpha-trehalase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11347 lncRNA downstream 114070 53864951 ~ 53865675 (-) True G9161
TU11321 lncRNA downstream 116376 53796770 ~ 53863369 (-) False AMCG00004567
TU11338 lncRNA downstream 149965 53794078 ~ 53829780 (-) False G9153
TU11415 lncRNA upstream 98180 54086575 ~ 54087038 (-) True G9217
TU11462 lncRNA upstream 217158 54205553 ~ 54206013 (-) True G9261
TU11477 lncRNA upstream 270168 54258563 ~ 54273287 (-) True G9273
TU11586 lncRNA upstream 453986 54442381 ~ 54450341 (-) False AMCG00004598
TU11684 lncRNA upstream 660656 54649051 ~ 54676988 (-) True G9427
AMCG00004573 mRNA downstream 14038 53963985 ~ 53965707 (-) True AMCG00004573
AMCG00004571 mRNA downstream 30381 53935744 ~ 53949364 (-) True AMCG00004571
AMCG00004572 mRNA downstream 51132 53910377 ~ 53928613 (-) True AMCG00004572
AMCG00004569 mRNA downstream 74722 53878275 ~ 53905023 (-) True AMCG00004569
AMCG00004567 mRNA downstream 148852 53796818 ~ 53830893 (-) True AMCG00004567
AMCG00004574 mRNA upstream 4056 53992451 ~ 54004550 (-) True AMCG00004574
AMCG00004575 mRNA upstream 44239 54032634 ~ 54043428 (-) True AMCG00004575
AMCG00004579 mRNA upstream 116666 54105061 ~ 54122487 (-) True AMCG00004579
AMCG00004581 mRNA upstream 206953 54195348 ~ 54204995 (-) True AMCG00004581
AMCG00004582 mRNA upstream 217685 54206080 ~ 54219868 (-) True AMCG00004582
TU11324 other downstream 123180 53686416 ~ 53856565 (-) False AMCG00004567
TU11319 other downstream 157523 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 289746 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 791724 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 1028358 52946812 ~ 52951387 (-) True G8937
TU11409 other upstream 45069 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 371703 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 588245 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 588245 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1379190 55367585 ~ 55420058 (-) True G9604

Expression Profile