RNA id: AMCG00004571


Basic Information

Item Value
RNA id AMCG00004571
length 1368
RNA type mRNA
GC content 0.57
exon number 12
gene id AMCG00004571
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53935744 ~ 53949364 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCAGCATGCGGCAGTCCTACACGGTGACGGTGCCCGAGGACCCCCCGTCCGCCGGCTTCCCGTTCCTCAAGCAGGAGATGCGGCGCAAGACCACGGCGGTGTCCGGCTCGGTTCTGGTGTCGACCTTCGTGGGGCTGCTCATTAATCAGGCCAAGGTAAGAGCGCCCGCCGGCGGGATCTCCAGTCCGCACGCCGATAAGCGCTCCTCCGGACACGTTTATGTAACGGGGGCTTTTAGTGCTTCAACTCTTAATGCAGCGCATGTAATCCGCACCAACTCCAAGACTGCGCAGGGTCTGGTGGGACTGCGGAACCTGGGCAACACAtgCTTCATGAACTCCATTCTGCAGTGTCTCAGTAATACTCAGCAGCTGCGGGACTACTGCATACAGAACTCGCACCGCAGAGACCTCCACAACAACACCCGCGTGCACACCGCACTCATGGAAGAGTTTGCCAAGCTGATCCAGACGCTCTGGAGCTCGTCGGGCAGCGAGGCCGTCAGCCCCTCGGAGTTCAAGACCCAGATTCAGAAATACGCCCCCCGGTTCGTGGGATACAACCAACAGGACGCTCAGGAGTTCCTGCGGTTCCTGCTGGATGGGCTGCACAACGAGGTGAACCGGGTGACCGTCCGGCCCCGGGCCTCCACAGAGGACCTGGATCACTTACCGGACGACGAGAAAGGGAAGCGGATGTGGAACAAATACCTGGAGAGAGAAGACAGCCGAGTAGTGGATCTGTTTGTTGGGCAGCTCAAGAGCTCCTTGACCTGCTCTGACTGTGGCTACTGCTCCACCGTTCTTAACAGCCCTTTTTGTTTGCCCTTTGACCCGGTACAGAAAGGTTATGGCGAGGTCAGCTTGATGGACTGCATGCGGCTGTTCACCAAGGAGGACGTTCTGGACGGCGATGAGAAGCCGACATGCTACAGATGTAAAGCCAGGAGGAAATGCACAAAGAAGTTCACCATTCAGAAATTCCCAAAGATCTTGGTGCTCCGTATCCTTCCCATGCCAAAGACCCGGTTCTGGGTGTGTCCGGCTCACTATCTCAAGCGGTTCTCTGAAGCTCGGATCAGAACCAGCAAACTCTCCACGTTCGTCAACTTCCCCCTGAAGGACCTGGACCTCCGGGAGTTTGCATCTGAGAACAGCATCCACGCAGTCTATAACCTGTATGCAGTGTCCAATCACTCGGGGACGACCATGGGCGGCCACTACACAGCCTACTGCCGCAACCCTGCCTCCGGAGAGTGGTACACCTTCAACGACTCCAGAGTCACCCCAATGTCCTCCAGCCAAGTTCGCAGCAGCGATGCCTACGTCCTGTTCTACGAGCTGTCCACCTCCTCCAGAATGTGA

Function

GO: NA

KEGG:

id description
K11833 USP2; ubiquitin carboxyl-terminal hydrolase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11347 lncRNA downstream 70069 53864951 ~ 53865675 (-) True G9161
TU11321 lncRNA downstream 72375 53796770 ~ 53863369 (-) False AMCG00004567
TU11338 lncRNA downstream 105964 53794078 ~ 53829780 (-) False G9153
TU11415 lncRNA upstream 137211 54086575 ~ 54087038 (-) True G9217
TU11462 lncRNA upstream 256189 54205553 ~ 54206013 (-) True G9261
TU11477 lncRNA upstream 309199 54258563 ~ 54273287 (-) True G9273
TU11586 lncRNA upstream 493017 54442381 ~ 54450341 (-) False AMCG00004598
TU11684 lncRNA upstream 699687 54649051 ~ 54676988 (-) True G9427
AMCG00004572 mRNA downstream 7131 53910377 ~ 53928613 (-) True AMCG00004572
AMCG00004569 mRNA downstream 30721 53878275 ~ 53905023 (-) True AMCG00004569
AMCG00004567 mRNA downstream 104851 53796818 ~ 53830893 (-) True AMCG00004567
AMCG00004560 mRNA downstream 307862 53618422 ~ 53627882 (-) True AMCG00004560
AMCG00004562 mRNA downstream 324475 53607807 ~ 53611269 (-) True AMCG00004562
AMCG00004573 mRNA upstream 14621 53963985 ~ 53965707 (-) True AMCG00004573
AMCG00004570 mRNA upstream 30381 53979745 ~ 53988395 (-) True AMCG00004570
AMCG00004574 mRNA upstream 43087 53992451 ~ 54004550 (-) True AMCG00004574
AMCG00004575 mRNA upstream 83270 54032634 ~ 54043428 (-) True AMCG00004575
AMCG00004579 mRNA upstream 155697 54105061 ~ 54122487 (-) True AMCG00004579
TU11324 other downstream 79179 53686416 ~ 53856565 (-) False AMCG00004567
TU11319 other downstream 113522 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 245745 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 747723 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 984357 52946812 ~ 52951387 (-) True G8937
TU11409 other upstream 84100 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 410734 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 627276 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 627276 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1418221 55367585 ~ 55420058 (-) True G9604

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000053_00064905_00080433.mRNA True 3065 mRNA 0.44 10 CI01000053 63803 ~ 80812 (+)