RNA id: AMCG00004572


Basic Information

Item Value
RNA id AMCG00004572
length 1365
RNA type mRNA
GC content 0.63
exon number 9
gene id AMCG00004572
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53910377 ~ 53928613 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGCCAATCACGTCTCCACTGGCTGCCTGGGTCTGCCGGCTTCCGCTGCAGGCCCCGCCCCTCGCTGTGTGCGGCTGCCCGCGTCTGTGTGCTGCGTCACTTCCGGCATGAGGGGGGTCGCTCTGACAGCTGGATCAACAATAACAAGAACCCCAGTCTGCTAAAGAAGGGGGGGTGGTTCACCGAGGCGCACGGGTGCACGGAACAGCCTCTGCCTGAGGGGACGGATCGAGAAGCTGCCGCAGAAGGGCGAGGGGGGCAGCGTCTGTGCGTTCCTGCTGCGGTGCTGTTCCTGGCGATCCCACGAGTCGGCTGGAAGGGAATCTCCCTGTTGGCCGTACCGTCCCTGTCCTGTCCTTTCAGGCTCGCTGGGGAGGGCCCTGAGAGTGGATCGGGGGAGAAGGAGGCAGCCGCAGTCACAGACGGCGAGGCCATGTGGGAGGGGGCGACAGAGGCGGTGGTAGAGGGACGCACCTTCATGCAGGTGCTCAGCGAGAAGTACAGCCCCGAGAACTTCCCCTACCGCCGCGGGCCGGGGATCGGCGTGGTGGTGCCGGCCGGGCCACAGGGCTCGCCCATGAAAGACCGCCTGAACCTGCCCAGTGTGCTGATCGGTAAGATCGTGTCCAACATCCCCAACCTGGACTTCCTGAACCTGAGCTCCAACCCCCTGAGCGAGGTGGCTCTGGACCTCAGCTGCGCAGAGGCCTTCGTCAGGGTGCGGCGGCTCGTCCTCAACAATACGCGGGTCTCCTGGGACACCGTGCACACCTTCACCCACCAGATCCCAGATCTGGAAAACCTGGTCCTGGCCAACAACAACCTCACTTCCATCCAGGACTCGGGGGACACGCTGTGCAGACTCTTCCCCTGCCTGCGCTCCATCAACCTGCACAACTCAGgtTTGAATAGCTGGGAAGACATTGAGAAACTGAACTTCTTCCCGAAGCTGGAGGAGGTGAGGCTCCAAGGAATCCCCCTACTGCAAACCTACACCAACACGGAGCGCCGGAGCCTCATCATTGCACAGTTGCCTTCTGTGTCAATGCTGAATGGCAGCGTGTACGGGAAGCTGGCCCCGCTGGCGGACATCGACTTGCGGCCACGCTGCCATGCCAAGGTGGAGGTGCACTGCGAGGACAAGGTGGAGCTGGTGAGCATCCGGCTGGACCAGACGGTGGCCGAGCTGAAGAAGCAGCTGCGGAGGGTGGTGCAGCTATCCACGGGCAACATGCGCCTGTACTACATCGACAAGGACGTGGCCTGCGCCTTCGGGCCCGAGGAGATGAAGTATAGCTCGCGGGCGCTGCACTCCTACAGCATCCGAGACGGCGACGAGATCCTGGTGGTGCCCAAATCCAAG

Function

GO: NA

KEGG:

id description
K22449 TBCEL; tubulin-specific chaperone cofactor E-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11347 lncRNA downstream 44702 53864951 ~ 53865675 (-) True G9161
TU11321 lncRNA downstream 47008 53796770 ~ 53863369 (-) False AMCG00004567
TU11338 lncRNA downstream 80597 53794078 ~ 53829780 (-) False G9153
TU11415 lncRNA upstream 157962 54086575 ~ 54087038 (-) True G9217
TU11462 lncRNA upstream 276940 54205553 ~ 54206013 (-) True G9261
TU11477 lncRNA upstream 329950 54258563 ~ 54273287 (-) True G9273
TU11586 lncRNA upstream 513768 54442381 ~ 54450341 (-) False AMCG00004598
TU11684 lncRNA upstream 720438 54649051 ~ 54676988 (-) True G9427
AMCG00004569 mRNA downstream 5354 53878275 ~ 53905023 (-) True AMCG00004569
AMCG00004567 mRNA downstream 79484 53796818 ~ 53830893 (-) True AMCG00004567
AMCG00004560 mRNA downstream 282495 53618422 ~ 53627882 (-) True AMCG00004560
AMCG00004562 mRNA downstream 299108 53607807 ~ 53611269 (-) True AMCG00004562
AMCG00004561 mRNA downstream 304961 53587275 ~ 53605416 (-) True AMCG00004561
AMCG00004571 mRNA upstream 7131 53935744 ~ 53949364 (-) True AMCG00004571
AMCG00004573 mRNA upstream 35372 53963985 ~ 53965707 (-) True AMCG00004573
AMCG00004570 mRNA upstream 51132 53979745 ~ 53988395 (-) True AMCG00004570
AMCG00004574 mRNA upstream 63838 53992451 ~ 54004550 (-) True AMCG00004574
AMCG00004575 mRNA upstream 104021 54032634 ~ 54043428 (-) True AMCG00004575
TU11324 other downstream 53812 53686416 ~ 53856565 (-) False AMCG00004567
TU11319 other downstream 88155 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 220378 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 722356 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 958990 52946812 ~ 52951387 (-) True G8937
TU11409 other upstream 104851 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 431485 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 648027 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 648027 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1438972 55367585 ~ 55420058 (-) True G9604

Expression Profile