RNA id: AMCG00004573


Basic Information

Item Value
RNA id AMCG00004573
length 780
RNA type mRNA
GC content 0.68
exon number 2
gene id AMCG00004573
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53963985 ~ 53965707 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGTCTGCCGCCGCCTCGCTGCAGCTGAGATCAGGCATGTCTCGCCTTTCCTCTACGGCCAAGCGCTACACGAGCTCCACCTACAGCAGCCAATATGGCTCCTACGGCTCCTCGCTGGGGTCCAGCCTGGGCTCCTACGGCGAGCGGGACAAGTACTCCTACAAGAgtcccacctcctcctccagctaCACGCCCTCCAGCTACCTGAGCACGGGCGCCGGGCGCACCCGCAACTACAGCACGTCCTCTGAGCCAGACCGGGGCCGCCCGATGCCCCGCACGGACCTGCTGGGCGGCCGGCGCAGCGAAAGCCTGAGCCGGACGCCAGTCAAGGCCTATGGCTCGGGCCTGAGTGGAGGGGGGGGCTACTCCAGCTACAGCTACTCCTCGAACCAGGCCAGCTAcctctccacctcctcccccGCGTCTTCCCGCATCACCCTCAGTCGCCGCAAGTCAGTCAGCCAGAGCGACCTGACCCGGGAACTAGCCTCCCTGGGGCTGTCGGACCCGTCACCCGGGGGCAGGGCGCTGGACGCCGGCTCGTACCGCAGCCGGGGCAGCGTCAGCAGCACTGGGAATGAGGTGAGCGACTCGTACGGCAGCTCCCGCTCCAGCTATGGCATCTCGCGCAGCTCCACGCAGGAGGCGctcggcagcagcagcagcagcagcctgagGAACAGCCGCTTCACCCCCTCCTGGGAGAGCAGCAGCCTGGGCCGAGGCGGCTCGCCCACCCGGGTGCCCACGGTGCCTGAAATGTTCAAGACATAA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11347 lncRNA downstream 98310 53864951 ~ 53865675 (-) True G9161
TU11321 lncRNA downstream 100616 53796770 ~ 53863369 (-) False AMCG00004567
TU11338 lncRNA downstream 134205 53794078 ~ 53829780 (-) False G9153
TU11415 lncRNA upstream 120868 54086575 ~ 54087038 (-) True G9217
TU11462 lncRNA upstream 239846 54205553 ~ 54206013 (-) True G9261
TU11477 lncRNA upstream 292856 54258563 ~ 54273287 (-) True G9273
TU11586 lncRNA upstream 476674 54442381 ~ 54450341 (-) False AMCG00004598
TU11684 lncRNA upstream 683344 54649051 ~ 54676988 (-) True G9427
AMCG00004571 mRNA downstream 14621 53935744 ~ 53949364 (-) True AMCG00004571
AMCG00004572 mRNA downstream 35372 53910377 ~ 53928613 (-) True AMCG00004572
AMCG00004569 mRNA downstream 58962 53878275 ~ 53905023 (-) True AMCG00004569
AMCG00004567 mRNA downstream 133092 53796818 ~ 53830893 (-) True AMCG00004567
AMCG00004560 mRNA downstream 336103 53618422 ~ 53627882 (-) True AMCG00004560
AMCG00004570 mRNA upstream 14038 53979745 ~ 53988395 (-) True AMCG00004570
AMCG00004574 mRNA upstream 26744 53992451 ~ 54004550 (-) True AMCG00004574
AMCG00004575 mRNA upstream 66927 54032634 ~ 54043428 (-) True AMCG00004575
AMCG00004579 mRNA upstream 139354 54105061 ~ 54122487 (-) True AMCG00004579
AMCG00004581 mRNA upstream 229641 54195348 ~ 54204995 (-) True AMCG00004581
TU11324 other downstream 107420 53686416 ~ 53856565 (-) False AMCG00004567
TU11319 other downstream 141763 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 273986 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 775964 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 1012598 52946812 ~ 52951387 (-) True G8937
TU11409 other upstream 67757 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 394391 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 610933 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 610933 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1401878 55367585 ~ 55420058 (-) True G9604

Expression Profile