RNA id: TU11409


Basic Information

Item Value
RNA id TU11409
length 843
RNA type TUCP
GC content 0.44
exon number 2
gene id AMCG00004575
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54032634 ~ 54043428 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAggtccctcccttcctccccgGAGCAGCAACTCCACCCCCATCAGCCAGCCGGGATCCATCAATCCCAGCATGCCCTTCACGTCCTCGCCGGATGCGCCCCCTCCTTCCCAGAACCCCCTGTCTCTCATCATGTCCCAGATGTCCAAGTACGCCATGCCCAGCTCCACGCCGCTGTACCACGACGCCATCAAGACCATCGCCACCTCCGACGACGAGATGCTCCCAGACCGGCCCCTGATGCCCGGTGTCAACATGGCAGGGAGCATGGGGAACCACCAGGGCCCCCCGATGCACCTCGGCTCGCAGAACTCCATGGGTCCCCACAGCGGCTCTCAAAGCCCCATGGGCATGGTCCTCCAGGGCCAGCCCCCGCTGTCCCACGAACCCTCGGGGCCTATGCTGCACTCCCCCAACCCCATGGGCATGGGGATGAACCCGGCAATGATGGGGGGAGGCGGCGGTGGCCCCCCGGATAGCATGGGCCCCTGCACAGTGTCGCCCCTGCTCCCCCAGAACCAGATGGGCGGCTTCCCAAGGCTgcagcccccgcccccccatgGACCCCTGCACTCCCCGGGACCCCACCCCGGGATGCCCCAGCAGTACCCCTCCGAGGAGGCCCTGGCGCATCACCAGCTGCAGCTGCTCAGCAAGAGCCTGGCTTCCCAACGGCCCCCCCAGGACTCGTACCCCCTGCCCCTGGGTGACGGCCCCGACCTGAGCGAGGTGATCCGGCCCTCCGCCTCGGGGATCCCCGAGTTTGACCTGTCGCGCATCATCCCCTCGGACAAGCCCAGCAGCACCCTGCAGTACTTCCCCAAGAGCGAGGGCCCCGGACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11347 lncRNA downstream 167789 53864951 ~ 53865675 (-) True G9161
TU11321 lncRNA downstream 170095 53796770 ~ 53863369 (-) False AMCG00004567
TU11338 lncRNA downstream 203684 53794078 ~ 53829780 (-) False G9153
TU11341 lncRNA downstream 208978 53823311 ~ 53824486 (-) False AMCG00004567
TU11339 lncRNA downstream 238120 53794078 ~ 53795344 (-) True G9153
TU11415 lncRNA upstream 51053 54086575 ~ 54087038 (-) True G9217
TU11462 lncRNA upstream 170031 54205553 ~ 54206013 (-) True G9261
TU11477 lncRNA upstream 223041 54258563 ~ 54273287 (-) True G9273
TU11586 lncRNA upstream 406859 54442381 ~ 54450341 (-) False AMCG00004598
TU11684 lncRNA upstream 613529 54649051 ~ 54676988 (-) True G9427
AMCG00004574 mRNA downstream 28914 53992451 ~ 54004550 (-) True AMCG00004574
AMCG00004570 mRNA downstream 45069 53979745 ~ 53988395 (-) True AMCG00004570
AMCG00004573 mRNA downstream 67757 53963985 ~ 53965707 (-) True AMCG00004573
AMCG00004571 mRNA downstream 84100 53935744 ~ 53949364 (-) True AMCG00004571
AMCG00004572 mRNA downstream 104851 53910377 ~ 53928613 (-) True AMCG00004572
AMCG00004579 mRNA upstream 69539 54105061 ~ 54122487 (-) True AMCG00004579
AMCG00004581 mRNA upstream 159826 54195348 ~ 54204995 (-) True AMCG00004581
AMCG00004582 mRNA upstream 170558 54206080 ~ 54219868 (-) True AMCG00004582
AMCG00004583 mRNA upstream 188281 54223803 ~ 54226053 (-) True AMCG00004583
AMCG00004589 mRNA upstream 295726 54331248 ~ 54342566 (-) True AMCG00004589
TU11324 other downstream 176899 53686416 ~ 53856565 (-) False AMCG00004567
TU11319 other downstream 211242 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 343465 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 845443 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 1082077 52946812 ~ 52951387 (-) True G8937
TU11562 other upstream 324576 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 541118 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 541118 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1332063 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 1346694 55382216 ~ 55388939 (-) False G9608

Expression Profile