RNA id: AMCG00004581


Basic Information

Item Value
RNA id AMCG00004581
length 2478
RNA type mRNA
GC content 0.60
exon number 13
gene id AMCG00004581
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54195348 ~ 54204995 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGGGGTTTGGATGCAGCAGCGCGCCAAACAGCCGCGGGAGAGCAGCTGCGCAGCCGCTGTCATTGTCCGGACCGACACCACACACGACCGGCACCGCGGACGGCAGCGGGCCGGGACACGgcgggacgggacgggacgggacgggacgggacggggGTGGCGAACTTTTTAAACACTTCGAAACTTTGCGTCTTTTTAAACGGGTGACGTACCGCGAAGTTCAGAGCAGCATCTCTGCACAGATAGAGCCGGATAGGAGAGGATAGCATAACCGCCAAGGACTAACCGAGTTcaactgaataaataatcaGACACGCATTTCCAGGCGCTGTGAAGCAGCCCGGGGCGCAGGCTCTCTCTGCCCGGGAGGGGAGGCGCCGAGGCCGGCCTGTGCGGGTCTTGAGCTCGTCGCTGGGGTCGCAGCGAGTCCCAGtgttgTCCTCGTCTGTGGCAATGGCGGTGCCCTTTGTGCAGGACTGGGACCTGGTTCAGACCCTGGGCGAGGGGGCGTATGGAGAGGTGCGTCTCCTGGTGAACCGGCAGACCGGGGAGGCGGTGGCGGTGAAGGTGGTGGACACCTCCCGGGCGGCCGACTGCGCCGAGAACATGAAGAAGGAGGTGTGCATCAACAGGCTGCTCAGCCACGCGGCTATCGTGCGCTACTTCGGGCACCGGCGCGAGGGCCCCACGCAGTACCTGTTCCTGGAGTATTGCAGCGGGGGGGAGCTCTTCGACCGCATCGagCCGGATGTGGGGATGCCGGAGTCGGACGCTCATCGTTTTTTCCAGCAGCTGATGGCGGGCGTGGAGTACCTCCACAGCGTCGGCATCACTCACAGAGACATCAAGCCCGAGAACCTGCTGCTGGACGAGGGAGacaACCTGAAGATCTCGGACTTCGGCCTGGCCACCATGTTCCGGCACCGCGGGCGCGAGCGGCGGCTGGGCCGGCTGTGTGGCACGATGCCCTACGTGGCGCCCGAGTTGCTCTCCCCGGGCGAGTTCCACGCCCCGCCAGTGGACCTGTGGGCCTGCGGCATCGTCCTCACCGCCATGCTGGCCGGggAGCTGCCGTGGGACCAGCCCAGTGAGAGCTGCCAGGAGTACTCTGACTGGCTGCAGAAGAAGACCTTCCTCACACCCTGGAAGAAAATCAATGCTGCTCCCCTCAGTCTGTTGTCCAGGATGCTGCTGCACGACCCTGACAAGAGGATCACCATCCCAGACATCAAGAAGGACCGCTGGTACTGCCGCAGCTTCAGGACAGGGGCGAAACGCCTGTCCTCGTCCAGCGGGGGGCAGTGTGACTCGCAGGGCTCGGGGAATAAGATGCTGCGCGCCGACTCTGAGCAGACCGGCCGGACCCGCAGggaggagGGTGCGCAGGTGTCCAGCTCCCAGCCAGAGCCGGTGACGGCGCTGGGCTcgtgggagggcccGTGGCAGCGTCTGGTCAGGCGGATGACGCGCTTCTTCACGGCGGTGGGAGAGGACCGCACCTGCTCGGCTCTCCGGGACGTGTGTCTCGGCATGGGCCACACCTGGAAACAGAGCTGCACCAATCAGGTGACGGTGTCGACGACAGATCGCCGAAACAACAAGCTGATCTTCAAGGTGCACCTGCTGGAGATGGAGCAAAGGATTCTGGTCGACTTCCGGCTGTCCAAGGGTGACGGCCTGGAGTTCAAGCGTCTGTTCCTGAAGATCAAGCAGCAGCTCGGCGACATTGTCAGCCACCAGAAGGTTTCGCTGCCCCTCCCCGTCACATGACGCGGGACACGGAGGAGCCCGCCGCCATCACGAGCGCACGGACAGACGCACGGACTCACGGTCACATGCTATCCAGCATACAAATGTACACGCAAACGCAAATCCCGATCAAGggggcagttttttttttgtaggtcacAGAAACCCCCAACTCAAAACCGTCACAGACACCCCGCTCTCAGTAGTTTTATTCTAGTTTAGCACTCGTCCTCGGTCACACCCCAGAAGAGAACGGCAGCCGATCAATTTGAAAGCGCCTCAAATGAGAAGCCTCTGAGTGGAGTGGTGATCGGGCCCCGGGGGCGTGTCCACAATGAACACAGTTTTCCTTCGTTGTTTTCTTGATGTTGTAGAACACTAAAGCGCTCGCCGCTCCAGATCCGACCCTCCGGTGTTGCATTTCGTAGCCACGAGAGTTGGGCCTTTTTATTCATCTGTTGTAGTTCTTTGCTGGGAGGAGAATGAGAAGAAATAAATGTGAACGCGGTTGCCCGTCCCCCAGATGGAGACGTTGTGGATATGTCTGTTCTCAATGTGGTTTGTTTggaatgatgataataataaataaatattgttgtgttgttCAGAGAGTGTGACTGGATCAGTGTGTCCGCTGAGCTGCGCCCAGCACAAATACTCTCGTAGTTTCTAACGTGAGAGATGTATCTGTCCTGTGTTGGGGGAGTGTGCCGGTAAAGGATCTGCG

Function

GO: NA

KEGG:

id description
K02216 CHEK1; serine/threonine-protein kinase CHEK1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11415 lncRNA downstream 108310 54086575 ~ 54087038 (-) True G9217
TU11347 lncRNA downstream 329673 53864951 ~ 53865675 (-) True G9161
TU11321 lncRNA downstream 331979 53796770 ~ 53863369 (-) False AMCG00004567
TU11341 lncRNA downstream 370862 53823311 ~ 53824486 (-) False AMCG00004567
TU11339 lncRNA downstream 400004 53794078 ~ 53795344 (-) True G9153
TU11462 lncRNA upstream 558 54205553 ~ 54206013 (-) True G9261
TU11477 lncRNA upstream 53568 54258563 ~ 54273287 (-) True G9273
TU11586 lncRNA upstream 237386 54442381 ~ 54450341 (-) False AMCG00004598
TU11684 lncRNA upstream 444056 54649051 ~ 54676988 (-) True G9427
TU11688 lncRNA upstream 472669 54677664 ~ 54677917 (-) True G9431
AMCG00004579 mRNA downstream 72861 54105061 ~ 54122487 (-) True AMCG00004579
AMCG00004575 mRNA downstream 151920 54032634 ~ 54043428 (-) True AMCG00004575
AMCG00004574 mRNA downstream 190798 53992451 ~ 54004550 (-) True AMCG00004574
AMCG00004570 mRNA downstream 206953 53979745 ~ 53988395 (-) True AMCG00004570
AMCG00004573 mRNA downstream 229641 53963985 ~ 53965707 (-) True AMCG00004573
AMCG00004582 mRNA upstream 1085 54206080 ~ 54219868 (-) True AMCG00004582
AMCG00004583 mRNA upstream 18808 54223803 ~ 54226053 (-) True AMCG00004583
AMCG00004589 mRNA upstream 126253 54331248 ~ 54342566 (-) True AMCG00004589
AMCG00004591 mRNA upstream 150012 54355007 ~ 54356449 (-) True AMCG00004591
AMCG00004590 mRNA upstream 151465 54356460 ~ 54373627 (-) True AMCG00004590
TU11409 other downstream 159826 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 338783 53686416 ~ 53856565 (-) False AMCG00004567
TU11319 other downstream 373126 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 505349 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 1007327 53185226 ~ 53188021 (-) False AMCG00004551
TU11562 other upstream 155103 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 371645 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 371645 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1162590 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 1177221 55382216 ~ 55388939 (-) False G9608

Expression Profile