RNA id: AMCG00004589


Basic Information

Item Value
RNA id AMCG00004589
length 2110
RNA type mRNA
GC content 0.62
exon number 9
gene id AMCG00004589
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54331248 ~ 54342566 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCGCCACAGCCACGGTCACAGTCTGCTTCCGATCAGCCTGTACTGCGGCCAGTGCCCGTGTCGCCGGGGGCTCTCTGTGTGGAGCGGGGGAAGTGAGGCTTGTGCCACTGTTGGGGAGGCTGAAGGGCCAGTGGCTGGTTGGCAGCGTTTCCCCTGTGTCCCTCGGCCGGTGCTGGAGTGCGGTGCTGCCAGGGGATGTCCCTGGGGCTTCCCCCCCTGTGATGCGGGAACAGGAAGGGGAGGCCAGGGTCGCCAGGTGGGCTGTCTCTGGCAGTCTTGGTGATTCTGTTGGGTGCTGTGGGAACCTGGCTCGAGGTGGAGAGGGTTCCTCTGGTGGCGATGCTGGTGACGTACAGAAGCGCAGCTACCTTGGAAGGATTGTTCAGCGTAGGAACAGCAAGAGTGTTTGTGGAGATGTCACTGTAGTTGGTGATCTGGTGTGGGAATGGGACCTGCTCAGCCCTCATGTGCGGCAGCGCGGATACGGGCGAGTCCTGGACCAGGAGACACTGCGGTGCCAGGGCCGGTCAGCGGGCGCTGGGCGCTGGGGGCTGGGCACTGGGCACTGGGCGATGGGCACTGGGGGCTGGGCACTGGGCACTGGGCGATGGGCACTGGGAAgaaaaaatgaaagcatgaaTAATTGGGTCGTCTTGCGTGTCGTCCCTCCCTCGCACAGGCGCGCAGGCGCGCAGCAGGAGAGGCAGAGCAGCGGACAGGTGCCCCGCTCACGACTACATCACAAGAGCaagtttacaaaacaacaagGCAGCGGGACGATGGCCAACTTCAAGGGGCACGCTCTGCCTGGCAGCTTCTTCCTGCTGTTCGGACTGTGGTGGTCGGTCAAGTACCCGCTGCGCCAGCTCTGGAGGCAGGGGCAGCGGCCGGGGGGGCGCACCAGGGTGCCGGCCTGGTTCGCCCGCATGGAGCTGGTGGAGGGGGGGCTGAAGATCTTCTTCTCCTTCGCGGGCATCATGGCGGAGCAGTTTGTGCCAGACGGTCCCCATGCCTACCTGTACGCCGGGGAGGACCACACCTGGGTGAAGCTGATGAACTGGCAGCACAGCACCATGTACCTGTTCTTCGGGCTGTCCGGCGTGGCCGACGTGCTGCCCGCCCTGTCGCTGCCCCTGCCCCTGGGCCTGGACCGCCTGGCGCTGGCGCTGGCTCTGTTCGTGGAGGGGTTCCTGTTCTATTTCCACGTGCACAACCGCCCCCCCCTGGACCAGCACATCCACTCCCTGCTGCTGGTGGGGGTGTTCGGGGGGGCCGGCTGTGCGCTGCTCGAGGTCTTCCTGAGAGACCAGCCCATCGGCGCTGTGCTGTACCCCCCCAGCGGAGGCCCTGCCTGGGATGAGGACGACCACAGCAACATCATGTTCATCACCATGTGCTACTGCTGGCACTACGCCGCCGCCCTGCTGCTCATGGCACTGAACTACAGCCTGGTGTGGATcGGTGTGCGGCGCTGTGCGGGGCAGCAGGGCGGCGACATGGAGATCAGGCTGCGCAAGACCGGCAGCTCCGGCAACTCCGACAGCAGCTCCCACAAGGCCCTGCTCCAGGACTCCGACGAGGAATAGGCGGACAGAGGGAGGGACGGACGGATACTGTCAGACAGAGCAATGGACTGATACAGCCTGGAGACGGACGGACAGAGAGACGGAAATCCCTTttcagacagaaagacagactgtAATCACTTTatatatggatggatggaacaACAGACCCCTTCCCACAGACTGACTGGATTCTGGGCCCTCAGAATGACACCTGACTTCCTGTCTGGGGGCCACAGGTCACTCTCCCCTGGCTGCTCTGGGTCCCCCTCACACAGCGCAGTCCCGGAGAGGGGCCACAGCCCCATCTCTCCCCTGCATTTCCCCACAAGGAGCACTTTTCTACTTTCTAGGAATGGAAATCACAGCtactagaacataagaacataagtgtccaatcgagaggagcccattcgccccatcgtgctcgtttggtgtccattaataactatgtgatctaggatcctatccagtctgtttttgaatgttcccaaattgtctcttcagccacatcgctggggagtttgttcagattgtgacg

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11477 lncRNA downstream 57961 54258563 ~ 54273287 (-) True G9273
TU11462 lncRNA downstream 125235 54205553 ~ 54206013 (-) True G9261
TU11415 lncRNA downstream 244210 54086575 ~ 54087038 (-) True G9217
TU11347 lncRNA downstream 465573 53864951 ~ 53865675 (-) True G9161
TU11321 lncRNA downstream 467879 53796770 ~ 53863369 (-) False AMCG00004567
TU11586 lncRNA upstream 99815 54442381 ~ 54450341 (-) False AMCG00004598
TU11684 lncRNA upstream 306485 54649051 ~ 54676988 (-) True G9427
TU11688 lncRNA upstream 335098 54677664 ~ 54677917 (-) True G9431
TU11705 lncRNA upstream 350780 54693346 ~ 54789735 (-) True G9445
TU11723 lncRNA upstream 443828 54786394 ~ 54788637 (-) True G9461
AMCG00004583 mRNA downstream 105195 54223803 ~ 54226053 (-) True AMCG00004583
AMCG00004582 mRNA downstream 111380 54206080 ~ 54219868 (-) True AMCG00004582
AMCG00004581 mRNA downstream 126253 54195348 ~ 54204995 (-) True AMCG00004581
AMCG00004579 mRNA downstream 208761 54105061 ~ 54122487 (-) True AMCG00004579
AMCG00004575 mRNA downstream 287820 54032634 ~ 54043428 (-) True AMCG00004575
AMCG00004591 mRNA upstream 12441 54355007 ~ 54356449 (-) True AMCG00004591
AMCG00004590 mRNA upstream 13894 54356460 ~ 54373627 (-) True AMCG00004590
AMCG00004592 mRNA upstream 31133 54373699 ~ 54373947 (-) True AMCG00004592
AMCG00004599 mRNA upstream 51909 54394475 ~ 54398918 (-) True AMCG00004599
AMCG00004598 mRNA upstream 99205 54441771 ~ 54450102 (-) True AMCG00004598
TU11409 other downstream 295726 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 474683 53686416 ~ 53856565 (-) False AMCG00004567
TU11319 other downstream 509026 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 641249 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 1143227 53185226 ~ 53188021 (-) False AMCG00004551
TU11562 other upstream 17532 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 234074 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 234074 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1025019 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 1039650 55382216 ~ 55388939 (-) False G9608

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037625 True 1637 mRNA 0.42 6 NC_007132.7 25236297 ~ 25247052 (+)