RNA id: TU11562


Basic Information

Item Value
RNA id TU11562
length 855
RNA type TUCP
GC content 0.61
exon number 7
gene id AMCG00004590
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54356460 ~ 54373627 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcagatTTCGGCTTCAGTAACATCTTCTCGAGGGGGCAGCTGTTGAAGACGTGGTGTGGCAGCCCTCCCTATGCGGCACCCGAGCTCTTCGAGGGGAAGGAGTATGATGGGCCCAAGGTGGACATCTGGAGTCTGGGGGTGGTTCTGTACGTGCTGGTGTGTGGCGCCCTGCCCTTCGACGGCAGCACCCTGCAGAACCTGCGGGCCCGCGTGCTCAGCGGCAAGTTCCGGATCCCCTTCTTCATGTCAACAGactGTGAGTACCTGATCCGACACATGTTGGTCCTGGAGCCCAGCAAGCGCCTCTCCATGGAGCAGATCTGCAAAAACAAGTGGATGAAGCAGGGAGACCCCGACCCTGAGTTCGAGAGGCTCATAGTGGAATGTGAGCAGGTGAAGTCGGACAGGCAGACGGAGCCCATCAACGATCAGGTGCTGCTGGCCATGGTGGAGATGGGGCTCGACCGCGAGCGCACACTACAGTCTCTGCACCGAGAGGAGTACGATCACTACAGTGCCATCTACAGTCTGCTGTGCGAACGGCTGAAGAGGCACAAGACCCTGCGCATCGCACCCCCGCCCGCCCGCAACGTCGGCTACCCCGGCATCAGCACCGTGCAGgtGGAGCAGCCGGGCAGCCAAGTCAGTATCACTGTCCCCCAAGTCCAGCTCATCAACCCTGACAACCAAATTGTGGAGACGGACGGGGCAATGGCTCTGGACAGTGACGAAGGGGAGGAGCCGTCCCCGGAGGCCATGGCACGGTACCTCTCCATGCGCCGACACACTGTGGGCGTCCCGGATCCCAGGCCAGTAACCATACCCGTCTGTTTGTCTTGCTGTCCTCTGCCCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11477 lncRNA downstream 86811 54258563 ~ 54273287 (-) True G9273
TU11462 lncRNA downstream 154085 54205553 ~ 54206013 (-) True G9261
TU11415 lncRNA downstream 273060 54086575 ~ 54087038 (-) True G9217
TU11347 lncRNA downstream 494423 53864951 ~ 53865675 (-) True G9161
TU11321 lncRNA downstream 496729 53796770 ~ 53863369 (-) False AMCG00004567
TU11586 lncRNA upstream 78114 54442381 ~ 54450341 (-) False AMCG00004598
TU11684 lncRNA upstream 284784 54649051 ~ 54676988 (-) True G9427
TU11688 lncRNA upstream 313397 54677664 ~ 54677917 (-) True G9431
TU11705 lncRNA upstream 329079 54693346 ~ 54789735 (-) True G9445
TU11723 lncRNA upstream 422127 54786394 ~ 54788637 (-) True G9461
AMCG00004591 mRNA downstream 3649 54355007 ~ 54356449 (-) True AMCG00004591
AMCG00004589 mRNA downstream 17532 54331248 ~ 54342566 (-) True AMCG00004589
AMCG00004583 mRNA downstream 134045 54223803 ~ 54226053 (-) True AMCG00004583
AMCG00004582 mRNA downstream 140230 54206080 ~ 54219868 (-) True AMCG00004582
AMCG00004581 mRNA downstream 155103 54195348 ~ 54204995 (-) True AMCG00004581
AMCG00004592 mRNA upstream 9432 54373699 ~ 54373947 (-) True AMCG00004592
AMCG00004599 mRNA upstream 30208 54394475 ~ 54398918 (-) True AMCG00004599
AMCG00004598 mRNA upstream 77504 54441771 ~ 54450102 (-) True AMCG00004598
AMCG00004605 mRNA upstream 237192 54601459 ~ 54606827 (-) True AMCG00004605
AMCG00004607 mRNA upstream 335549 54699816 ~ 54708011 (-) True AMCG00004607
TU11409 other downstream 324576 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 503533 53686416 ~ 53856565 (-) False AMCG00004567
TU11319 other downstream 537876 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 670099 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 1172077 53185226 ~ 53188021 (-) False AMCG00004551
TU11664 other upstream 212373 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 212373 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1003318 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 1017949 55382216 ~ 55388939 (-) False G9608
TU11941 other upstream 1165396 55529663 ~ 55543553 (-) False AMCG00004640

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018082 False 5231 mRNA 0.50 15 NC_007126.7 21781765 ~ 21837207 (-)
grasscarp (Ctenopharyngodon idella) CI01000072_04225105_04268007.mRNA False 3208 mRNA 0.54 15 CI01000072 4224789 ~ 4268148 (+)