RNA id: TU11586


Basic Information

Item Value
RNA id TU11586
length 2977
lncRNA type sense_over
GC content 0.43
exon number 5
gene id AMCG00004598
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54441771 ~ 54450341 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGAGGTGGTTTCAGCACCAACTCCAGGGAGGTGCTCTGATGATGGTTACAACCTCTGCTCGGGGGGTGCGACCCTAAAGGTCTGATGGCCGAGATTGTCCTCCACTGATAACTACTGGGGTGTCACTGCCGCTCGGGGGGGTTGCGAGTCTGCGGAACAATCCAGTTCGCGATCTTGCGGCTGGCGCTGAGCGACGCCCTCGCCCCCAACCACTGCACTTCCTGCCccgagacagagacacacagagacacagagagacagacacggagagagagTCCTCCCTTGCGTTGAGGAAAGCGCTGCCTGTTGTCTCCAGTAAACGCGAGCCGCGTAAGGCGCCAGGTTCTGATCGGGTCCGACCCAGTCACAGGCCTCCAAGTCAACCGTCGCCAGAGTAAGGAGATCGCCGCCGTGAGCGACGTCTAGAGCCAAGATGAACAAAGTCATCCTCTGCCTCTTCCTCACCATAACTGTAGATCACTGTGTTTCAGATACTGATCCATCGAAGTCTCTGGAACCACGGTTACCCTGAACTGTGACTATGACACACCACAATGGGGCAAAGTAAAAGGGGAGTTCGACCCAAAACACACCACATCAAAATTCTTATCAATTTCAAATTACAGCGACGaatctgtattgtattattgttatgagCATGAAGATAGAAAAACCTATTTTTACTTCAAGGGAAAAGTGTGTGAGAACTGCTACGAGGTGGAGATACCGATGCTGGCCGGTGTGATCGTGATCGACCTGCTGGTGACAATGGGGGTCGTGATCCTGGTCTACTACTGCTCCCAGAAGAAGGGTGGCGCCTCGCCTCTTGCCCCAGCCTCCCGTCCTGGACGCAATGACCGCGCCCCCCCGGTGCCCAACCCTGACTACGAGCCCCTTCGCACTGGGACCCATGACCTGTACAGCGGACTCCATAAGAACTAGGATCTGTCCTTGGCCTTTCCAGTCTGTTTCCAACCCAGTTCTCCCAGTCTGTTGGGCTCCTaccttcctcctcttcctcaagCACAAAAAAATGCTCAAATTACTTCATTAATCTAGTTATGTGATCAGTTACAGGTATATAATAGAAGCCGAACTCCCTACTTTGGGGGATGCCAGTTCTCTCTGCACTCCATAGTCTATCCAAGTCCACTGAATCGTTTCCTTGCTTAATTCATTAAAAGGACAACTCATTTAATTGTCCCATAGCTGATCGCGTGGGAAGCCTGTAAATAGTGCAACATGTTTTGTAAACACCTGGATTGTCTACGGTAAATGAAAGCCCACGTCAACAGTATTGTGTTAAAAAGTAAAGCTGACTAATGTCGCCAACCGTGTCAGTGTAAAATTATCTCAGTGAAACatcatcagtgtgtgtgtctgtgttttttccacTCATCACTTTGTCAATATGTGTAAGACTGCGCAGTCACGTCGCCGGCCTTTTCTGTAAACTTTACGATTATATTCCGGAACTCGGCGGGATTCTCTCGGAATGGAAGGGTCAGCCGTTCTGAAGATAAATTCATCTGCGCTTGTTTTTCAAGAGCTCTTATTCGCTAGACAGCGGCGCTAGTTTTCACAATCTGATACGAGTAGATCTGTAAAGTACAAGACTTTttatgtacagttttttttgtatattgtaaaaaatattttcatttttagacTTCGTCGGAGTATACTAATTGATTGATAATGATTTAGAAAACTAGTATGATTAGTTTAATTTTTACAGGCAAGGTTTGATACACCCTATATAGCCGAGTACTACAACATCTTTGACACCGAAAAAACAGATACCATTGTGATCctctttttcttctcaaaattgaaatagatttaaatctgatgtgtttttaataatcagGCATCATTTACAGCAAACCCAATGGGTGGAAGAAATATATTCAGCACCCACCAGGGCTGCAAGTGatgatatttgtattatatatatttttgggagAAAAGTAgaaattgtacatatttttataaaaagtattttcaaaccAAGTCCTTTTTGCATAGATTAAAAAGCCTCAGTGATGAAAAGGGTATTTTTATTGTAAGCATTGGCCTGAAATCACGCTGTTTAgcacaatttattttctaatttctgGTCACACAACCGAGCTGTTTGTAGAATGCCAGTGATGTTATCCGGCCAGGGTAGTAACGGCGGCCATGGCTGTCACATGACGGTGTGTTGCTCAGACAGGAGATACAATAATGGTATATTTCAGATTGATGTAAAAAACAATCGGCCCAACTATGCGTCTGTAATTTACACAAGAGACAGACAGGTGGTGAATCGGGGACAATAATTTGGAAGAAGCGGTGGAGCGTTTCTACTGTTTGTGCCTCTCAGAACATTTCTCTCTCATTGATGCTTGTTCCTCAACTGGATTGAACTATTTATGTGATTTGATTGTGGCTCCTTCGTTCCACTCAGTGAAACACTTCCCATATAGTGTCTGTGTCAGTCTTAGGGATTTACTGAGTGATGAGAAGAGCTACACCGGCACAGAAGAAATGGGAAAAGgtttatacagaaataaatgtacaattacGATTTTTAGccactttttaatttatacCTGTAGTTCTTTTGTTGAGAGCCATTTAATGCTAACCTGAACTTGCAAATAATATGTCTGAAATTTGTAATACTGTGATTAAACTGTTCAAGTGATTGTTGCTTGGCAAAACGCTCTCCGCTTGTTCTTATTGAAGTGTTCCGGTTCTGGTTTTGTGAAcaaatctttcattttctttggttttgGACACTTGTTTAGTAGATGCATGTATTCAATTGATGAAAAGGTACCAAAATACGCCTCAGAAATGTTTTAGtgaccaaataaaaacaggagAAGGAACATTTTGGTATCGGCTCATGAGGGTGTCCatagaaaacattaatatttgcTTTCTAATTGTTTTACTACAGGGGCACTCAGGGATAAGTCAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11477 lncRNA downstream 169094 54258563 ~ 54273287 (-) True G9273
TU11462 lncRNA downstream 236368 54205553 ~ 54206013 (-) True G9261
TU11415 lncRNA downstream 355343 54086575 ~ 54087038 (-) True G9217
TU11347 lncRNA downstream 576706 53864951 ~ 53865675 (-) True G9161
TU11321 lncRNA downstream 579012 53796770 ~ 53863369 (-) False AMCG00004567
TU11684 lncRNA upstream 198710 54649051 ~ 54676988 (-) True G9427
TU11688 lncRNA upstream 227323 54677664 ~ 54677917 (-) True G9431
TU11705 lncRNA upstream 243005 54693346 ~ 54789735 (-) True G9445
TU11723 lncRNA upstream 336053 54786394 ~ 54788637 (-) True G9461
TU11738 lncRNA upstream 465276 54915617 ~ 54918457 (-) False AMCG00004618
AMCG00004599 mRNA downstream 43463 54394475 ~ 54398918 (-) True AMCG00004599
AMCG00004592 mRNA downstream 68434 54373699 ~ 54373947 (-) True AMCG00004592
AMCG00004590 mRNA downstream 68754 54356460 ~ 54373627 (-) True AMCG00004590
AMCG00004591 mRNA downstream 85932 54355007 ~ 54356449 (-) True AMCG00004591
AMCG00004589 mRNA downstream 99815 54331248 ~ 54342566 (-) True AMCG00004589
AMCG00004605 mRNA upstream 151118 54601459 ~ 54606827 (-) True AMCG00004605
AMCG00004607 mRNA upstream 249475 54699816 ~ 54708011 (-) True AMCG00004607
AMCG00004618 mRNA upstream 465243 54915584 ~ 54919938 (-) True AMCG00004618
AMCG00004622 mRNA upstream 527506 54977847 ~ 54998428 (-) True AMCG00004622
AMCG00004621 mRNA upstream 559363 55009704 ~ 55018100 (-) True AMCG00004621
TU11562 other downstream 78114 54360098 ~ 54364267 (-) False AMCG00004590
TU11409 other downstream 406859 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 585816 53686416 ~ 53856565 (-) False AMCG00004567
TU11319 other downstream 620159 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 752382 53686416 ~ 53689999 (-) False AMCG00004567
TU11664 other upstream 126299 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 126299 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 917244 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 931875 55382216 ~ 55388939 (-) False G9608
TU11941 other upstream 1079322 55529663 ~ 55543553 (-) False AMCG00004640

Expression Profile