RNA id: AMCG00004620


Basic Information

Item Value
RNA id AMCG00004620
length 1566
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00004620
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55030260 ~ 55035952 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCATATATTTCCTGGAGCTAAAGAGGTGGGAAAGTGGTCCCGTGGGGCCGCTGTTTCCCAGAGGAGCCTGGaTCATCAACATGAAGTTCGTGGCCCTGACCTTGGTTGTCCTGTTGGCTGCCGgAGCGCAGGCTCGGTACCTGTGGCAGGCTGATGCTCCACCCTCACAGGCGCAGCAGGTGCAGCAGGCCGTTTCCATGTACCTAGCACAGGTACACGAGACGATCAAGAGAGCCATCGACCAGGTGGAGGGCACGAAGCTGAGCAATGAATACAAgctGAAGGTGACCCAGGGCCTGGACAGTTTCCAATCCTACTTGCAGCAAGCCTCCAAGTCCATCGTCCCCATGGGAGAGACCGTGAGCCAGCAGGTGCTGGATGCCACCAGGGCCTACCGGGAGAAAGCCTTGAAGGACATCGAAGAACTGCGCAAGACGCTGGAGCCCCAGAGGGAGGAGGTGCGTCTGGCCATTCAGAAGCACACTGAGGAGTACCGCGAGAAGCTGGAGCCCCTGCTCCGCGAGGAGCTGGAGCGCAGCCGCGTGAGGCTGCAGGAGCTGCGCACCAAGGTGGAGCCCCTGGCAgaggagctgaaggagaaggTGAAGGTCAACGTGGAGGAGTTGAAGACCAAGCTGACACCCATCGTGGAGGCCGTGCGAGCCAAGCTGACTGAGCGTCTGGAGACCATCCGCCAGTCGGCCGCCCCCTATGCCGAGGAGTACCGCAGCAAGGTGGACGAGGCAGTGAAGGAGGTGCGTGAGAAGGTGACCCCCTTCGGCCAGGAGCTGCAGGCCAAGCTGCAGCCCTACAGAGAGGAGGTGGTGGCCAAGCTGACCGCGCTCTGGGAGACCGTCGCCCAGAGCCTGAAGCAGTAAAAGCCCCGGCATGCTGAAGCACACCctccccgacacacacacaccaaacacgTCCTCACTTCCTGAGACCCTGAAACCCCAAGATCCGCGCCCGCATCCCCCACCCACCTGTAGGTGCACCCAGGGACAGAGCCGGGACACCTTGCCATCTGGAGACACGGACACAACGACACAGTACTGCTCTCACTGATGCACTGCTGGCTTCCGCAACGAAGACCAGCGTGCCCTTCCCCAGTCCCTGGgatgcacacagacactgtcTGGGGAGCAGGCacactctccctcactctctctgtctctgtctcactgtctttGCCGCTGCTCAGCATTGTTCAGTAAAGGCTTATTCTACACACCACCCCCGTCACCTTGAATGTTTTCTCCTCCCCAATAAAAGCCTTGCTGTTTGCTAAgaagtgcatctctctctggttattgaccccccccccagcacacAGACATTGCAGGGCCAACACAGCAGCCTCCAGTCACATTGTGGCATCCGTACAATAAAGTGACCATAGACAAATATGACACTGTGGCAGCACCAAGCTGTGGCCTTCAGGGCATGTGGTCAAAACATGGTAAAATAACgttataaaattacattcaaatgagcacactgagaaataaacattcacacacaaaaaacaatacaatgaatgaaaaacaacttgaaaggga

Function

GO:

id name namespace
GO:0006695 cholesterol biosynthetic process biological_process
GO:0033344 cholesterol efflux biological_process
GO:0005615 extracellular space cellular_component
GO:0008289 lipid binding molecular_function
GO:0008035 high-density lipoprotein particle binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11804 lncRNA downstream 10164 55019897 ~ 55020096 (-) True G9517
TU11776 lncRNA downstream 21462 55007762 ~ 55008798 (-) True G9504
TU11787 lncRNA downstream 26457 55001583 ~ 55003803 (-) False G9512
TU11799 lncRNA downstream 26457 55001583 ~ 55003803 (-) True G9512
TU11772 lncRNA downstream 55263 54964740 ~ 54974997 (-) False G9502
TU11810 lncRNA upstream 38094 55074046 ~ 55074375 (-) True G9523
TU11821 lncRNA upstream 78390 55114342 ~ 55116494 (-) True G9533
TU11822 lncRNA upstream 78390 55114342 ~ 55114911 (-) False G9533
TU11867 lncRNA upstream 226973 55262925 ~ 55263287 (-) True G9570
TU11890 lncRNA upstream 310831 55346783 ~ 55357633 (-) True G9593
AMCG00004621 mRNA downstream 12160 55009704 ~ 55018100 (-) True AMCG00004621
AMCG00004622 mRNA downstream 31832 54977847 ~ 54998428 (-) True AMCG00004622
AMCG00004618 mRNA downstream 110322 54915584 ~ 54919938 (-) True AMCG00004618
AMCG00004607 mRNA downstream 322249 54699816 ~ 54708011 (-) True AMCG00004607
AMCG00004605 mRNA downstream 423433 54601459 ~ 54606827 (-) True AMCG00004605
AMCG00004625 mRNA upstream 80685 55116637 ~ 55136087 (-) True AMCG00004625
AMCG00004627 mRNA upstream 104953 55140905 ~ 55141489 (-) True AMCG00004627
AMCG00004628 mRNA upstream 169133 55205085 ~ 55219718 (-) True AMCG00004628
AMCG00004633 mRNA upstream 188883 55224835 ~ 55270161 (-) True AMCG00004633
AMCG00004630 mRNA upstream 236391 55272343 ~ 55293024 (-) True AMCG00004630
TU11665 other downstream 410205 54576640 ~ 54620055 (-) False G9414
TU11664 other downstream 447030 54576640 ~ 54583230 (-) True G9414
TU11562 other downstream 665993 54360098 ~ 54364267 (-) False AMCG00004590
TU11409 other downstream 994738 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 1173695 53686416 ~ 53856565 (-) False AMCG00004567
TU11901 other upstream 331633 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 346264 55382216 ~ 55388939 (-) False G9608
TU11941 other upstream 493711 55529663 ~ 55543553 (-) False AMCG00004640
TU11944 other upstream 493711 55529663 ~ 55551225 (-) False AMCG00004640
TU12067 other upstream 786197 55822149 ~ 55836177 (-) False AMCG00004653

Expression Profile