RNA id: AMCG00004625


Basic Information

Item Value
RNA id AMCG00004625
length 1545
RNA type mRNA
GC content 0.57
exon number 13
gene id AMCG00004625
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55116637 ~ 55136087 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGTCCAATCCAACAGAAACCGCAGCAGTTTCCTGAAGCTGGGCAATGCGGTGGTGACAGCAGCCATGTTTCAGATTAAGAAGATCTGCTGTATCGGGGCCGGCTATGTTGGGGGTCCAACGTGCAGCGTTATTGCGCAGATGTGTCCGCAGATCAAGGTTACAGTGGTGGACCCTGGTCTGAAGGAAGTGGTGGAGTCCTGCAGAGGAAAGAATCTCTTCTTCTCCACCGATATCAACTCTGCCATTAAAGAGGCAGACCTCGTCTTCATTTCTGTGAACACCCCGACGAAAACCTACGGCATGGGGAAGGGCCGGGCGGCTGACCTCAAGTTCATCGAAGCCTGTGCCCGGCGGATAGTGGAGGTGTCTGACGGGTACAAGATCGTGACGGAGAAGAGCACGGTGCCGGTGCGCGCGGCCGAGAGCATCCGGAGGATATTTGACGCCAATACCAAGCCCAGCCTCAACCTGCAGGTGCTGTCCAACCCCGAGTTCCTGGCAGAGGGTACGGCCGTGCGGGACCTGAAGAACCCAGACCGCGTCCTGATTGGGGGTGACGAGACACCCGAGGGCCAGAGGGCTATTCACGCCCTGTGTGCCGTCTACGAAACCTGGGTGCCCAAGAACAAGATCATCACCACCAACACCTGGTCTTCTGAGCTCTCCAAGCTGGCAGCCAACGCATTCCTCGCCCAGAGAATCAGCAGCATCAACTCCATCAGCGCCCTGTGCGAGTCGACCGGGGCCGACGTGGAGGAGGTGGCCAAGGCCATCGGGATGGACCAGCGCATCGGCAGCAAGTTCCTCAAGGCCAGTGTGGGATTTGGTGGCAGCTGTTTTCAGAAAGATGTCCTCAATCTCGTGTACCTCTGTGAGGCGCTCAATCTCCCTGAAGTGGCGACATATTGGCAACAGGTAATTGACATGAATGAGTACCAGAGAAGGCGGTTTGCGTGCCGTATCATCGACTGTCTCTTCAACACCGTCACAGGAAAGAAAATCGCCCTCCTGGGCTTCTCCTTCAAAAAGGACACGGGTGATACACGGGAGTCCTCCAGCATCTACATCTCCAAGTACTTGATGGACGAAGGGGCCAAGCTGCAGATCTACGACCCCAAGGTGCTGAAGGAACAAATCATCCAGGATTTGTCTCACCCCACCATCTCTGAGGACAACCCTGAGAGAGTGTCCCAGCTGGTGACCGTCACCAAGGACCCGTACGAAGCGTGCGAAGGCGCCCACGCTCTGGTCATCTGCACAGAGTGGGACATGTTCAAGGAGATGGACTTTGACAGGATCTACAAGACCATGCTGAAACCAGCCTTCATATTTGATGGCAGGAGAatCGAGACGATCGGTAAGAAGGTGACGACCCCACGCATCCCCTTCACTCCCCCGACCGGAATCCCCCGGATCAGCCTCCTTGACCCCCCCGCCAAGAAGGCTAAAGCACCCAAGACCGAGACCCGCCTCCTGCGCTGCGCTGTGGAAGAGGCTCTGGATTCGGACACGTTGTTTCTCACCAGCAGAGAGGACTGA

Function

GO:

id name namespace
GO:0003188 heart valve formation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003979 UDP-glucose 6-dehydrogenase activity molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00012 UGDH, ugd; UDPglucose 6-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11821 lncRNA downstream 143 55114342 ~ 55116494 (-) True G9533
TU11822 lncRNA downstream 1726 55114342 ~ 55114911 (-) False G9533
TU11810 lncRNA downstream 42262 55074046 ~ 55074375 (-) True G9523
TU11804 lncRNA downstream 96541 55019897 ~ 55020096 (-) True G9517
TU11776 lncRNA downstream 107839 55007762 ~ 55008798 (-) True G9504
TU11867 lncRNA upstream 126838 55262925 ~ 55263287 (-) True G9570
TU11890 lncRNA upstream 210696 55346783 ~ 55357633 (-) True G9593
TU11907 lncRNA upstream 250562 55386649 ~ 55388939 (-) True G9608
TU11952 lncRNA upstream 417737 55553824 ~ 55559308 (-) True G9643
TU11973 lncRNA upstream 442189 55578276 ~ 55584995 (-) True G9656
AMCG00004620 mRNA downstream 80685 55030260 ~ 55035952 (-) True AMCG00004620
AMCG00004621 mRNA downstream 98537 55009704 ~ 55018100 (-) True AMCG00004621
AMCG00004622 mRNA downstream 118209 54977847 ~ 54998428 (-) True AMCG00004622
AMCG00004618 mRNA downstream 196699 54915584 ~ 54919938 (-) True AMCG00004618
AMCG00004607 mRNA downstream 408626 54699816 ~ 54708011 (-) True AMCG00004607
AMCG00004627 mRNA upstream 4818 55140905 ~ 55141489 (-) True AMCG00004627
AMCG00004628 mRNA upstream 68998 55205085 ~ 55219718 (-) True AMCG00004628
AMCG00004633 mRNA upstream 88748 55224835 ~ 55270161 (-) True AMCG00004633
AMCG00004630 mRNA upstream 136256 55272343 ~ 55293024 (-) True AMCG00004630
AMCG00004631 mRNA upstream 175313 55311400 ~ 55313771 (-) True AMCG00004631
TU11665 other downstream 496582 54576640 ~ 54620055 (-) False G9414
TU11664 other downstream 533407 54576640 ~ 54583230 (-) True G9414
TU11562 other downstream 752370 54360098 ~ 54364267 (-) False AMCG00004590
TU11409 other downstream 1081115 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 1260072 53686416 ~ 53856565 (-) False AMCG00004567
TU11901 other upstream 231498 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 246129 55382216 ~ 55388939 (-) False G9608
TU11941 other upstream 393576 55529663 ~ 55543553 (-) False AMCG00004640
TU11944 other upstream 393576 55529663 ~ 55551225 (-) False AMCG00004640
TU12067 other upstream 686062 55822149 ~ 55836177 (-) False AMCG00004653

Expression Profile