RNA id: AMCG00004627


Basic Information

Item Value
RNA id AMCG00004627
length 585
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00004627
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55140905 ~ 55141489 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGAGAGGAAGACATTCGAGGAGGCCGAGACGGAGGAGCTGCTCACCTGCCTGCGGATCCAGATTTACCACCCGCAGCAGAGCAGCAAGGACGTGTGCCGCCACCTGACCTTGTACAAGAAGCAGAAGCATGCGTTGGAGGTGATGCTGCAGTTCGGCCGCGACGCCAAGGTGTGTGACTTCTCCCTCTACGACTCGCGCGTCTCCCGGCGCCAGTTCGCCATTGAGGCTTTCCGCCCCTTCAACAGCTCCGAGCTCGCATTCGAGATTAAGAACCTCAGCAAGAAAGGCAAGATGGCGGTGAATGGACTGGAGCTGGATTACCTCAACAAAGTGGATCTGCCCGATAAGGCCCTGGTGAGGTTCTCCGAGTTCCAGCTGATGTTCTTCACGGAGCCCGGGGATTCCAACCAAGGCTTTGACATCCTTTTCGAGCAGGCTCCGGGACCCCTGTGCCAGGAGGTGGGAGACGCAGAGTACCCAGTCCCTGTTACCGACACCGGCTTCGACTATGTGGCTCCTGTGAGACAGTTTTCCCTGCAGGGGCCCCTGGAGAATGACGAGCGAATGCTGCTTACATGA

Function

GO: NA

KEGG:

id description
K23826 TIFA; TRAF-interacting protein with FHA domain-containing protein A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11821 lncRNA downstream 24411 55114342 ~ 55116494 (-) True G9533
TU11822 lncRNA downstream 25994 55114342 ~ 55114911 (-) False G9533
TU11810 lncRNA downstream 66530 55074046 ~ 55074375 (-) True G9523
TU11804 lncRNA downstream 120809 55019897 ~ 55020096 (-) True G9517
TU11776 lncRNA downstream 132107 55007762 ~ 55008798 (-) True G9504
TU11867 lncRNA upstream 121436 55262925 ~ 55263287 (-) True G9570
TU11890 lncRNA upstream 205294 55346783 ~ 55357633 (-) True G9593
TU11907 lncRNA upstream 245160 55386649 ~ 55388939 (-) True G9608
TU11952 lncRNA upstream 412335 55553824 ~ 55559308 (-) True G9643
TU11973 lncRNA upstream 436787 55578276 ~ 55584995 (-) True G9656
AMCG00004625 mRNA downstream 4818 55116637 ~ 55136087 (-) True AMCG00004625
AMCG00004620 mRNA downstream 104953 55030260 ~ 55035952 (-) True AMCG00004620
AMCG00004621 mRNA downstream 122805 55009704 ~ 55018100 (-) True AMCG00004621
AMCG00004622 mRNA downstream 142477 54977847 ~ 54998428 (-) True AMCG00004622
AMCG00004618 mRNA downstream 220967 54915584 ~ 54919938 (-) True AMCG00004618
AMCG00004628 mRNA upstream 63596 55205085 ~ 55219718 (-) True AMCG00004628
AMCG00004633 mRNA upstream 83346 55224835 ~ 55270161 (-) True AMCG00004633
AMCG00004630 mRNA upstream 130854 55272343 ~ 55293024 (-) True AMCG00004630
AMCG00004631 mRNA upstream 169911 55311400 ~ 55313771 (-) True AMCG00004631
AMCG00004629 mRNA upstream 172907 55314396 ~ 55336233 (-) True AMCG00004629
TU11665 other downstream 520850 54576640 ~ 54620055 (-) False G9414
TU11664 other downstream 557675 54576640 ~ 54583230 (-) True G9414
TU11562 other downstream 776638 54360098 ~ 54364267 (-) False AMCG00004590
TU11409 other downstream 1105383 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 1284340 53686416 ~ 53856565 (-) False AMCG00004567
TU11901 other upstream 226096 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 240727 55382216 ~ 55388939 (-) False G9608
TU11941 other upstream 388174 55529663 ~ 55543553 (-) False AMCG00004640
TU11944 other upstream 388174 55529663 ~ 55551225 (-) False AMCG00004640
TU12067 other upstream 680660 55822149 ~ 55836177 (-) False AMCG00004653

Expression Profile