RNA id: AMCG00004633


Basic Information

Item Value
RNA id AMCG00004633
length 1218
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00004633
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55224835 ~ 55270161 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGACCCCTCCGTCTTGCACTTCAGTGGTCTGGCCAGTGTGACCCCAGAAGGAGCTCAGTTCAGCACTCCCTCCACCTACCAATTAATGGCTAACTCTGACTACTGCCAGGCCCAGGAACATCTGAGGAAGTTCTTGAAAGGAGAGCCGAAAGTGCTGGGGTACATCATCTCTGGCTCCCTCTGCATCGCTGCAAACCAGAACCTCCGTTCAGACTTGATAAAAGCAGCCCTTGCCATGAACATTGTCAGCAGCATTGTGGCTTTCATAGGAGTAATACTCTATATCATCGATTTGATTATTTCGAGCAGCTACAATTTAGTGACTATGGCTGACCCCTCCGTCTTGCACTTCAGCGGTCCGGACAGTATGACCCCAGGAGGAGCTCAGTTCAGCACTCCCTCCACCTACCAGTCAATGGCTAACTTTGCCTTCTGCCAGACCCAGGAACATCTGAGGAAGTTCTTAAAAGGAGAGCCGAAAGTGCTGGGATACATCATCTCTGGCTCCCTCTGCATCGCTGCAAACCAGATCCCCCGATCAGACTTGTCCATGTCCCAGGGGGTGAATGGGGTGATGTTGGTCCTCTCTCTGCTGGAGTTGTgtatctccatctccatctctgcTTTCGGCTGCAAAGCGACCTGCAATCAATCACCTGTGGCCAACTTCATGAAGTCTGATACACAAACATGGGGTTTCTCATATGATTATGAAGGTGAGACCCACACAGTCTCCCAGCTTGAGAAGCCAAATGTCAGCTATCTCTACATCAAGGGCACTGACAAGGTCCTGTCCTGTGGGGTGGAAGCATTAATCAACATCAGCTATGCTTTGACTGAGATGGACCTCCAGACTCACAAGAGATCTTTTGATCTGTTCGTCCTGATTCTAGACAATGGGGCCATTTCCTTGTATGAACACATTAAGCCCAGCACCTGCAGGTCCCGTGGCTGGACCATCACCGCCCCGGTGTCACTCCCGCCATTGTCGGCTGAACCCCAGGACCTCGCCTGCCCCACCCTGCCCAACACCGCCTTGGCCCCCCTGCGGCTTCAGGGCGTCCGCATCCAGAATTACCTAGACGAGCAGGTTCTAGCCCACACAGCCCTGGTCCTCGACCGCCTCCGTGGTCTAGGACTTCGGGTCAACTGGAAGAAGATCCGCTTAATGCCGACTCAACAGGCAAAGTTTCTAGCCCAGGGTATGCTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11821 lncRNA downstream 108341 55114342 ~ 55116494 (-) True G9533
TU11822 lncRNA downstream 109924 55114342 ~ 55114911 (-) False G9533
TU11810 lncRNA downstream 150460 55074046 ~ 55074375 (-) True G9523
TU11804 lncRNA downstream 204739 55019897 ~ 55020096 (-) True G9517
TU11776 lncRNA downstream 216037 55007762 ~ 55008798 (-) True G9504
TU11890 lncRNA upstream 76622 55346783 ~ 55357633 (-) True G9593
TU11907 lncRNA upstream 116488 55386649 ~ 55388939 (-) True G9608
TU11952 lncRNA upstream 283663 55553824 ~ 55559308 (-) True G9643
TU11973 lncRNA upstream 308115 55578276 ~ 55584995 (-) True G9656
TU11966 lncRNA upstream 314887 55585048 ~ 55605575 (-) True G9650
AMCG00004628 mRNA downstream 5117 55205085 ~ 55219718 (-) True AMCG00004628
AMCG00004627 mRNA downstream 83346 55140905 ~ 55141489 (-) True AMCG00004627
AMCG00004625 mRNA downstream 88748 55116637 ~ 55136087 (-) True AMCG00004625
AMCG00004620 mRNA downstream 188883 55030260 ~ 55035952 (-) True AMCG00004620
AMCG00004621 mRNA downstream 206735 55009704 ~ 55018100 (-) True AMCG00004621
AMCG00004630 mRNA upstream 2182 55272343 ~ 55293024 (-) True AMCG00004630
AMCG00004631 mRNA upstream 41239 55311400 ~ 55313771 (-) True AMCG00004631
AMCG00004629 mRNA upstream 44235 55314396 ~ 55336233 (-) True AMCG00004629
AMCG00004637 mRNA upstream 190092 55460253 ~ 55462726 (-) True AMCG00004637
AMCG00004640 mRNA upstream 259489 55529650 ~ 55534145 (-) True AMCG00004640
TU11665 other downstream 604780 54576640 ~ 54620055 (-) False G9414
TU11664 other downstream 641605 54576640 ~ 54583230 (-) True G9414
TU11562 other downstream 860568 54360098 ~ 54364267 (-) False AMCG00004590
TU11409 other downstream 1189313 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 1368270 53686416 ~ 53856565 (-) False AMCG00004567
TU11901 other upstream 97424 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 112055 55382216 ~ 55388939 (-) False G9608
TU11941 other upstream 259502 55529663 ~ 55543553 (-) False AMCG00004640
TU11944 other upstream 259502 55529663 ~ 55551225 (-) False AMCG00004640
TU12067 other upstream 551988 55822149 ~ 55836177 (-) False AMCG00004653

Expression Profile