RNA id: AMCG00004637


Basic Information

Item Value
RNA id AMCG00004637
length 916
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00004637
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55460253 ~ 55462726 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGACGCAGCCCGTTTCCCTGACACCGGAAGAGAGCGGCAGTGGAGCAGTAGATATAGCTAATCTGCGCTATATTATCCAAATAGAAAACTGGTTTAATGCTAAAAAAAACCCATTAATTTCAACTGTTAACGATAGTGCGCTGCTTAAAGTTACTTTGCTAAAGCAGACCTCGATGACTGACAGAGCAGCCTGAGCTCCAGCGTTGTGTGCAGTGTTTCCGCTGTGGGATACAGATGCACACAATCAGCACCGGACAACTGGCAGCCCCCCTTGCGATTTAATAACAGGGAATAAGTCTACAGCGAGCTCCCGTTACTGTGGAACTGTATTATTAAACGCAATGTCTTATTCTGTGGTAGCGTTTCAGAGCCAGCTCGCCGCTGTTATGGAGATCCTGGTCAAAGCCACGGTGTGTGAAATCACCAAACTGGTGGAGGGCAGCTTTGCGGATTTACACATCGAAATAGTGCAAAGCAAGGAAGAAAACGAGACCCTGAAGATGAGATTGCAGTTGCTGGAGATAGAGCTGGGAGCACAACGGGAATATAGCAGCAGCAGCGCACAGATAACGGGACCATCTCCAAACGGCCACCGTACCGGAGCCGAGCCGGTGTATCCCGAGGACACCGGGGCAGACGTCACAGCAGCGACGCCTGAGGAGGCTGATGAACTTGAGCCAATCATCATTAAAGAGGAGGAGACCGAACTCTGCCAAGATACTCTTCGCCTCACTGGCCTGGATTCTCCACACACTCCAGAGGACTGGCCAGGGCACCAGTCCACCAATGAGAACAAACAGGACAGTGAACAAATGCCAGTTAATGTGCCAGAAGGCATTTCAACACAGACTGAGGATGTCTTTAAGGAGATCAATGACTCGGAACAGCTTAAGGAgcaTGCTCGTAAgctttaa

Function

GO:

id name namespace
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11907 lncRNA downstream 71314 55386649 ~ 55388939 (-) True G9608
TU11890 lncRNA downstream 102620 55346783 ~ 55357633 (-) True G9593
TU11867 lncRNA downstream 196966 55262925 ~ 55263287 (-) True G9570
TU11821 lncRNA downstream 343759 55114342 ~ 55116494 (-) True G9533
TU11822 lncRNA downstream 345342 55114342 ~ 55114911 (-) False G9533
TU11952 lncRNA upstream 91098 55553824 ~ 55559308 (-) True G9643
TU11973 lncRNA upstream 115550 55578276 ~ 55584995 (-) True G9656
TU11966 lncRNA upstream 122322 55585048 ~ 55605575 (-) True G9650
TU11978 lncRNA upstream 144201 55606927 ~ 55607416 (-) True G9661
TU12018 lncRNA upstream 255411 55718137 ~ 55718729 (-) True G9698
AMCG00004629 mRNA downstream 124020 55314396 ~ 55336233 (-) True AMCG00004629
AMCG00004631 mRNA downstream 146482 55311400 ~ 55313771 (-) True AMCG00004631
AMCG00004630 mRNA downstream 167229 55272343 ~ 55293024 (-) True AMCG00004630
AMCG00004633 mRNA downstream 190092 55224835 ~ 55270161 (-) True AMCG00004633
AMCG00004628 mRNA downstream 240535 55205085 ~ 55219718 (-) True AMCG00004628
AMCG00004640 mRNA upstream 66924 55529650 ~ 55534145 (-) True AMCG00004640
AMCG00004641 mRNA upstream 151886 55614612 ~ 55628983 (-) True AMCG00004641
AMCG00004648 mRNA upstream 219726 55682452 ~ 55684986 (-) True AMCG00004648
AMCG00004649 mRNA upstream 275466 55738192 ~ 55739532 (-) False AMCG00004649
AMCG00004653 mRNA upstream 351676 55814402 ~ 55846171 (-) True AMCG00004653
TU11901 other downstream 40195 55367585 ~ 55420058 (-) True G9604
TU11906 other downstream 71314 55382216 ~ 55388939 (-) False G9608
TU11665 other downstream 840198 54576640 ~ 54620055 (-) False G9414
TU11664 other downstream 877023 54576640 ~ 54583230 (-) True G9414
TU11562 other downstream 1095986 54360098 ~ 54364267 (-) False AMCG00004590
TU11941 other upstream 66937 55529663 ~ 55543553 (-) False AMCG00004640
TU11944 other upstream 66937 55529663 ~ 55551225 (-) False AMCG00004640
TU12067 other upstream 359423 55822149 ~ 55836177 (-) False AMCG00004653
TU12437 other upstream 1017614 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 1150301 56613027 ~ 56694612 (-) False AMCG00004685

Expression Profile