RNA id: AMCG00004641


Basic Information

Item Value
RNA id AMCG00004641
length 1971
RNA type mRNA
GC content 0.58
exon number 13
gene id AMCG00004641
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55614612 ~ 55628983 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCGCAGGTGTGACGCGCTGGAGCCGCGCTGCGGACGTGACGGGCGTGACGGAAATAACCATGGAAACAACACCTGCAGACAGGTATAAGCGTGTCACCCAAAACCACACAAGCCTGTCCTCATCATTTCAGATGGAGTTCTGTAACCCAGCCTTTGAGCCGGAGAGTGAGGGAGAAGAGCAAGCCAGGAACAGCTTTAGTGTGGAGCCGCTTCCGGGCCCAGCAGGAAGTTGGCTGCGGCTGTGCGCTGTGCGTCTGGGGACCCCCTGGTGTGGACTAGCGGTGCTGGTTGTCTCAGTGTCGGTGTTTTTCCTTGTCAGTGCCCTTGGACTCACATTGCTGCTGGTTTTCACCCAGCTGAAGGAGCAACCCTCCCAGGAAGTGACTGTGGAGCCCCCTTTGAATTCTGGGAACAGAGACTCGCTCCCCAGCTTCCCGTTGAGCCCTGCTGACACAGACACGCACGGCAGCACTGCCCCCCACCAGCCGTCAGGAGACTCCACTGCTGCCCCTGGCGGTTCAGGCCCGGTTACAGAATGTCAATATCTTCTGTACAGTAGACTGCAAAAGACCAGTCAAGGTATGTCAGCAACGCCACGTGGTTTGCTTCTAGCTGACGTGTTCCCTTGCTCGTTGGCAGCCTGTGGGGGGGTCCTGAGGGAGCATGAGGGCACCTTCAGCTCGCCAAACCACCCTGCCAGCTACCCCCCTGACTCCCTCTGCGTGTGGACCATTGAGGTCAGCCCCCCCTTCCTTATCCAGCTGCACGTTTCATCGCTGGCGGTGGAGGGGCCAACCCCCTGCCTCTTCGACTGGTTGGAGCTACGGGAGGAGGCCATCAATGCCAGTAGCCTCTCCATCACCAGGTTTTGTGGGAACAAGGCACCCCCTACAGTGAACACCAACACCAGCACCTTGCAGGTCACCTTCAGATCAGACAGCAGTATTGGTGGAACAGGATTCACGGCCCGGTACCAGGCCATTTCCCCCAGCCAGAAAAGCTGCTCCTGGGACGAGTTTTTTTGTGATGGCGGTCGTTGTGTGCTACCGGGTGGTATGTGTGACAGTCACCCCGACTGCCTGGACTACAGTGATGAATCAAACTGCAGCCGCAAGCATAAAGAGTGTGGCGGACAGAAGACTGGCAGCAATGGAGACTTGTCAAGTCCAAACCACCCTAAACCTTATCCTCACCAGCAGctgtgtgtgtggcagATTTCTGTCACCGAGGGCCATGTCGTCAGGCTCACCTTCCGCAACTTCAGCCTGGAGACTCAGGATGTGTGCGAGTTTGACTTTGTGGAGGTGCACGACGGCACGGGCACCAAAGACAACAGTGTGCTGGGCAGATTCTGTGGGTCCAGTCTGCCTCCAGAGCTGACCTCCTCTGGCCCAGTGATGACCGTGCTGTTTGTGGCTGATGAGGGGGTGGCGGACAGTGGGTTCTTTGCCACCTACCAGGCTGTTACCGCCACAGACAAAACCTGTGGTCCTGAGCAGTTTTCCTGCGTCAATGGAGAATGCAAGGAGATGGAGTGGTTGTGCGACGGCTGGACCGATTGCTTGGATGGCAGTGACGAACTGGGCTGTGACAACTCCACATACCCCCCCTTCATGGCCCCCTGTGAACCAATTGAGGTGGAGATGTGCCAGGGTTTGAGCTACAACCTGACCTCTTTCCCAAACATCTGGCTCTCCATCTCAGACCAGAGGGAGGCGGCCAGCACGCTGAGACACTACAAGGTGTTGATGGAGCTGGCGTGTTTCGAAGCGCTGCGGCGGCTGGTCTGTGGGCTGTTCGTGCCGCAATGCagcagggaggggggggtgctACAGCCATGCCGCTCTGTGTGCGTCTCGGCCGAGCTGCAGTGCCGCCCATCCCTGGAGCTCCTCACTATGGGCTGGCCCTTCAACTGCCACCTCTTTCCCGATTCCCAGGACCCCATTGAGTGTGTCCTCCCCTAG

Function

GO: NA

KEGG:

id description
K24359 MFRP; membrane frizzled-related protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11978 lncRNA downstream 7196 55606927 ~ 55607416 (-) True G9661
TU11966 lncRNA downstream 9037 55585048 ~ 55605575 (-) True G9650
TU11973 lncRNA downstream 29617 55578276 ~ 55584995 (-) True G9656
TU11952 lncRNA downstream 55304 55553824 ~ 55559308 (-) True G9643
TU11907 lncRNA downstream 225673 55386649 ~ 55388939 (-) True G9608
TU12018 lncRNA upstream 89154 55718137 ~ 55718729 (-) True G9698
TU12020 lncRNA upstream 90981 55719964 ~ 55720217 (-) True G9700
TU12021 lncRNA upstream 92723 55721706 ~ 55722013 (-) True G9701
TU12027 lncRNA upstream 108582 55737565 ~ 55743297 (-) True AMCG00004649
TU12028 lncRNA upstream 108582 55737565 ~ 55743297 (-) False AMCG00004649
AMCG00004640 mRNA downstream 80467 55529650 ~ 55534145 (-) True AMCG00004640
AMCG00004637 mRNA downstream 151886 55460253 ~ 55462726 (-) True AMCG00004637
AMCG00004629 mRNA downstream 278379 55314396 ~ 55336233 (-) True AMCG00004629
AMCG00004631 mRNA downstream 300841 55311400 ~ 55313771 (-) True AMCG00004631
AMCG00004630 mRNA downstream 321588 55272343 ~ 55293024 (-) True AMCG00004630
AMCG00004648 mRNA upstream 53469 55682452 ~ 55684986 (-) True AMCG00004648
AMCG00004649 mRNA upstream 109209 55738192 ~ 55739532 (-) False AMCG00004649
AMCG00004653 mRNA upstream 185419 55814402 ~ 55846171 (-) True AMCG00004653
AMCG00004654 mRNA upstream 239664 55868647 ~ 55870960 (-) True AMCG00004654
AMCG00004652 mRNA upstream 260999 55889982 ~ 55894075 (-) True AMCG00004652
TU11944 other downstream 63387 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 71059 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 194554 55367585 ~ 55420058 (-) True G9604
TU11906 other downstream 225673 55382216 ~ 55388939 (-) False G9608
TU11665 other downstream 994557 54576640 ~ 54620055 (-) False G9414
TU12067 other upstream 193166 55822149 ~ 55836177 (-) False AMCG00004653
TU12437 other upstream 851357 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 984044 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 1056754 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 1118808 56747791 ~ 56750963 (-) True G10115

Expression Profile