RNA id: AMCG00004648


Basic Information

Item Value
RNA id AMCG00004648
length 1962
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00004648
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55682452 ~ 55684986 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGTCTCTATAAAATGCAGGATAAATTACAAGGAATTGGTCAAATCAGAATTTGGAGCAGTGCAAGCTTACAACGCCCTTCCTGGTGAATGCTTGAAGTTAGATGACAAATACACAAGACTCCTGATCATACAGAAGCACCGTcatcagaaagagagagaggaagagctGTGTTGCAGTGGCAAGACACATCAAGAAGTCATGGACCAGAGGGACAGTTGTGATTTCATGAGCACAACTGTGGAAAACCTGTTTAATTTGGATGAGTGTGCAAAGATCCAGAGAACGGTGATATTGCAAGGTCAAGCAGGCATTGGAAAATCTTTCACGGTGCAGAAAATCATGTCCGATTGGGCTTCTGGAAAGCATTATTGCAAGCAATTTGAATATGTCTTTCACCTGAAGTGCCAGCAACTTAATCTCATCAGAAAGCAGGTAAGTGTTGTAGACCTGATTCTAAGCAACTCTGAAGACTTGAAGCCAGTGATCCTGGAAATCCTGTCCCAGCCAGAGAAGATCCTGTTCATCATAGATGGGTTTGATGAAATAAAATTCTCACTGCATATCGGAGAAGATTCCCTTTGTCCCAATCCCCACCAACAGAGCTCGCTCGAAGTCACACTGAGCAGCCTTATCAGGAAAGTGGTCTTGTCCAAGTCATTCTTGCTCATCACTACGAGGTCTACTGCTCTAGAAAAGCTGAAGAAGGTTTTGAAACAACCTCGTTACACAGAAATCCTTGGTTTTTCAGAAAAGGGGATCaaagaatactttcaaaagtTTTTTAAGGATGAACACCAAGCAATGCGTGCCTTTActtatataaaagaaaatgacattgtTTACACAGCGTGCTTTATTCCGGTAGTGTGCTGGATTGTCTGCACGGTTTTGATGCAACAGTTTGAAGAAGGCACCAACATAACTCATGTCTTGAACACCAAAACcacaatatttatatactttgtGTACACTTTGCATGAATATCATTCAAAGGATGTTAGACTGCCAGTGCAGGACATCCTGAAACAGCTAGGCATTTTGGCAGAGAATGGTGTCAAGGAGCAACAGGTATTGTTTGCAGAAAAGCAAGTAAAAGAGATTTTTATGGATTCTTGTCACTTCCCatcttgctttttaaataagatCTTACTCAAGAAGGGCATTTTTAACCAGACTGTATACAGCTTCATGCACCTCAGCTTCCAGGAATTCTTTGCAGCCTTCTCATATGTTCTGTGTCAGGACGAGGAGGCCAAGAGGAAGGTGACAGAGCTCTTAAAGGACAGCCAAGACTATAGCAAAAGACACTTGCTCTCAACTGTCCAGTTCCTCTTCGGGCTTTCAAATGATGAAACAAGGCAGTTCATGGAGGAAAAATACAACCACTGCATTTCGTCAGAGATTCGATCACAGCTGAAGGAATGGATTCAGAAAGTGGGCAGCACCTATAAACCAGGATCGGATTTGCTCACCATTCTGTACTGTTTGTATGAGTTTCAGGACTGTGACTTTGTCAGAAGCGCAATGGAGAACTTCAGAGCAATATTCCTTCAGACTTTCCCATTAAAGAGAACTGATTGTGCCGTCCTGTCTTACTGTCTTCAGGCCTCCAGAGGCATTAAGATCCTTGATCTAAGTAACTGTAATCTAaacctggaggagctggaaATTCTGCTGCCAGAGCTGCATAAGTGTATTAATCTGAGGTTACACTTTAACAATCTGGGAGATGAAGGAGTTAAACTCTTGACTAAAGCCCTGAAGTCCTCTGGTTGTAAGATAACGAAACTTGGGTTGTGGAAGACTGGCCTGACAGAGGCCTGTGTCAATGACCTGTGCTTGGCTCTCAAAAAAGGGCAGTCAGTCACACAACTTTATTTAGATGGAAATGGATTCACAGATGCATCAATACCTGGTTTACTTTCCCTTATCCAGAAATGCGACAAACTGGATCGTTTT

Function

GO: NA

KEGG:

id description
K20865 NLRP12; NACHT, LRR and PYD domains-containing protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11978 lncRNA downstream 75036 55606927 ~ 55607416 (-) True G9661
TU11966 lncRNA downstream 76877 55585048 ~ 55605575 (-) True G9650
TU11973 lncRNA downstream 97457 55578276 ~ 55584995 (-) True G9656
TU11952 lncRNA downstream 123144 55553824 ~ 55559308 (-) True G9643
TU11907 lncRNA downstream 293513 55386649 ~ 55388939 (-) True G9608
TU12018 lncRNA upstream 33151 55718137 ~ 55718729 (-) True G9698
TU12020 lncRNA upstream 34978 55719964 ~ 55720217 (-) True G9700
TU12021 lncRNA upstream 36720 55721706 ~ 55722013 (-) True G9701
TU12027 lncRNA upstream 52579 55737565 ~ 55743297 (-) True AMCG00004649
TU12028 lncRNA upstream 52579 55737565 ~ 55743297 (-) False AMCG00004649
AMCG00004641 mRNA downstream 53469 55614612 ~ 55628983 (-) True AMCG00004641
AMCG00004640 mRNA downstream 148307 55529650 ~ 55534145 (-) True AMCG00004640
AMCG00004637 mRNA downstream 219726 55460253 ~ 55462726 (-) True AMCG00004637
AMCG00004629 mRNA downstream 346219 55314396 ~ 55336233 (-) True AMCG00004629
AMCG00004631 mRNA downstream 368681 55311400 ~ 55313771 (-) True AMCG00004631
AMCG00004649 mRNA upstream 53206 55738192 ~ 55739532 (-) False AMCG00004649
AMCG00004653 mRNA upstream 129416 55814402 ~ 55846171 (-) True AMCG00004653
AMCG00004654 mRNA upstream 183661 55868647 ~ 55870960 (-) True AMCG00004654
AMCG00004652 mRNA upstream 204996 55889982 ~ 55894075 (-) True AMCG00004652
AMCG00004660 mRNA upstream 322294 56007280 ~ 56008866 (-) False AMCG00004660
TU11944 other downstream 131227 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 138899 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 262394 55367585 ~ 55420058 (-) True G9604
TU11906 other downstream 293513 55382216 ~ 55388939 (-) False G9608
TU11665 other downstream 1062397 54576640 ~ 54620055 (-) False G9414
TU12067 other upstream 137163 55822149 ~ 55836177 (-) False AMCG00004653
TU12437 other upstream 795354 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 928041 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 1000751 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 1062805 56747791 ~ 56750963 (-) True G10115

Expression Profile