RNA id: TU12027


Basic Information

Item Value
RNA id TU12027
length 2380
lncRNA type sense_over
GC content 0.55
exon number 6
gene id AMCG00004649
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55737565 ~ 55743297 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACCATGGTGAAGGGAGGAAAATCAAGGGTCcgtaaaagaaaagagagagtgtCAAGGTCACCGGATTCACCAATAGAAGAATGTAGAAGAAATTATCAAACTCAAATGAAGCCACAGGTGGATTTACAGTTGAATCTTTGCTGAAGCCATCAAACTTCAAGCAGCAAAGAAGAGTCAGCGAGACATTACTGGGAGCTTTACAATCGTCAACTGCCCAAAATGTGCACAAACCTCCAGCTGTATGGACATGACACTACAGTAGAAAAGCTAAAGAAGAAATGTAACAATCTCCTTGTCACCAGAGGGCAAATAACAGGAGTTGGGTGTCTGGACAGGCCCAGCTTACATAGGAGAACTTTGAGGTAATGGATAGTCTGCTCTGCAAGAGAAAGGGGGCTTTAGCAACAATAGAGACCATTGTAACAACAAAGCCATTCCCAGGTTTGTCTGTGCCACAGTGACTCTTCTAAAGCCTCTTCCCAACCACTTTCATTAACATCAGGATGGACTGTGTGTGGCCATTGAGATTCCAGCCTCCCTCCCCCAACACATCCTACGAAAAAGAACAGCCTGGTGGAAATACAGCAGGAGGCATTTGACTGAACAAGCAGATCAGACTGGAAAAAGgacaaacacttttaaaacgTATGCATGGCAACTGTAGAAAAACTGTCGGAAAGCCGAACAGAGGGGTAGAAGAAGGGGGAAACAAATGTGAAGGAGCATGTTCATTTTTATAGGAATAAAGAATACAAGAACATATTCAAAAGtgaagaaaacatgttaaagTAGTCAATATGTTCAGTTTATTTCCAATGATGTAGCTTCTTTTTAATTGGTATTTACAGAGCTCACTGGCAGCCTGTCACAAGCTGTCTCACTTAACTGGAAAATGAAAGCAGGCctcatttcaaatgaaatgtgagCTATTAAGTTTCGTTTCATGGGAATCCCAAACGAACAACAGGGAGGCGTGGACAGTGGAGCTTGTTTAAAGGAGGCTTCACTCTGCTCGAAAACATAATCAAGCATCTTAGGAggttatttgtaatttgcatacATATCTATGCGCAAGAGACGCACGTTTGCAAAGATAATACTGGGATAttgatcaataataaaaaatgactaCAGGTacgtaatttaaaatgtactgaggagggagagagattgagTTTAACAGTTGTGCTATGGAGTCCGAACAGAGATGGTCTAGCAGAATTAGTGACAGACAGCAGACAATTTAACGTATGTCTTTTTGAACTTCAGACTGGATTCCCACTCTTTGGCAGGACACTTTCAGTGAAATGCTGGAGGAGGAACTGGAATATAATGATAGCTGGAGCTTCAATTCAATTATAGCCTGAAAGAGGATCTCGGCAAAGAGGAGAGAAAACGGGGCTGGAAGATTTATTGCCACTGTGCCCGCGGCAAATTTAGGTGCAGTGACTGCTCCAAAAACTTGGCCTTCAGCACGTGTGGTGGTTTTCTTTCACTACCGGCTACGGGGCGGTTCACACCACCGTGGAACTGTTATAATGCGGCCGTTTGGACAGGCGTGTCGCCGCTGCAATGAGGACTACTGGTTGCCGGGGTTTTCACAAGAGGAGGTGGAAAATGTCCTCCTAAAGCTGTTTagcaaaattaagaaaaactgCTACGGTGAAGACAATGACGATGACAGTTCCGACAGTTCTGAAAAGGTCTGGACAAAACCACATGAGAGCTCGCTGTGTGAAGCCTGCAACTAGGGGATCTGTTGCATGGAAGATTAATAGTTCTTGTAAAGTGTAATAACTATCCATCACTATAAGATGTTTATAAAGAGAGCTGGCCTATTCAAACAATTGTAAGCTGTTATGAAAACTGACAAtctctggtttgtttttgtagttgaATCAGATGCCATTGCTCTGCACAACACTTTTAACTTTTAAGGCTGTAAgtcattgtttatatataaatcaatgaaaCAATCTCAGAAACACCTTAAATCGAAGGAAATAGATAATGAATTCGCACATAAAAGGGACCAGCAGtaattgtttattatcattTGTCATTTCATGTTTATCATCTTTCAATAACAATTGCTATGAAATGTCAGTGACCACAAAACGGGGGAGCTAGGGAGCCCTCCGTTTTCCATTTTTAACAATTATGACTGATGAATACAGATCCAGTGTGTAGCGTAATATTCACCCATTCTTATGGGCtggtctgttttattatttattgcacatAACTCATGCCCGAAGTGTGGTCATAGGGTTAGATCTCCTATCATGttgtgtacagtgtacagtggtcttttaaactaatttaatattttaattaaaaatattaataaaaactgtcATGATGCTGTTTGAATCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12021 lncRNA downstream 15552 55721706 ~ 55722013 (-) True G9701
TU12020 lncRNA downstream 17348 55719964 ~ 55720217 (-) True G9700
TU12018 lncRNA downstream 18836 55718137 ~ 55718729 (-) True G9698
TU11978 lncRNA downstream 130149 55606927 ~ 55607416 (-) True G9661
TU11966 lncRNA downstream 131990 55585048 ~ 55605575 (-) True G9650
TU12047 lncRNA upstream 36128 55779425 ~ 55780607 (-) True G9719
TU12082 lncRNA upstream 146956 55890253 ~ 55894086 (-) False AMCG00004652
TU12085 lncRNA upstream 154559 55897856 ~ 55898062 (-) True G9751
TU12137 lncRNA upstream 262754 56006051 ~ 56008038 (-) True AMCG00004660
TU12143 lncRNA upstream 290201 56033498 ~ 56035949 (-) True G9794
AMCG00004648 mRNA downstream 52579 55682452 ~ 55684986 (-) True AMCG00004648
AMCG00004641 mRNA downstream 108582 55614612 ~ 55628983 (-) True AMCG00004641
AMCG00004640 mRNA downstream 203420 55529650 ~ 55534145 (-) True AMCG00004640
AMCG00004637 mRNA downstream 274839 55460253 ~ 55462726 (-) True AMCG00004637
AMCG00004629 mRNA downstream 401332 55314396 ~ 55336233 (-) True AMCG00004629
AMCG00004653 mRNA upstream 71105 55814402 ~ 55846171 (-) True AMCG00004653
AMCG00004654 mRNA upstream 125350 55868647 ~ 55870960 (-) True AMCG00004654
AMCG00004652 mRNA upstream 146685 55889982 ~ 55894075 (-) True AMCG00004652
AMCG00004660 mRNA upstream 263983 56007280 ~ 56008866 (-) False AMCG00004660
AMCG00004663 mRNA upstream 349812 56093109 ~ 56096391 (-) True AMCG00004663
TU11944 other downstream 186340 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 194012 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 317507 55367585 ~ 55420058 (-) True G9604
TU11906 other downstream 348626 55382216 ~ 55388939 (-) False G9608
TU11665 other downstream 1117510 54576640 ~ 54620055 (-) False G9414
TU12067 other upstream 78852 55822149 ~ 55836177 (-) False AMCG00004653
TU12437 other upstream 737043 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 869730 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 942440 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 1004494 56747791 ~ 56750963 (-) True G10115

Expression Profile