RNA id: AMCG00004652


Basic Information

Item Value
RNA id AMCG00004652
length 1445
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00004652
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55889982 ~ 55894086 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGCAGCCTCTCACGGTGTCAGCGCAAACTGCAGCTCCCTGACCGCAGACACCGAGCGCCTTCAGGCGCAGAACTCACGCCACCGCCAGGTCCTCACCCAGCTCCTCACAAACCTCCCCTCTCTGGAGAAATACTGTCCTGTCCGAGATTCAGAGTCACAGGAGAGAGTTTGCCAGCCGTGCCCACAGGGCTGGCAGTCATTCAACTCCAAGTGTTACTACTTCTCTACCGAGAGACAGCGCTGGAATGACAGTCAGGCTGCATGCAGAGACCAGGGAGCTAACCTGGAGTTCATCTGGAGACAGAGTATAAAGGCCTCCTGGCATTACTGGATTGGACTGACTGGCGCAGTGAAATGCAAAGCCTGGCTTTGGGTAGATGGCAGTAGCCTAAATGTACAGTACTGGGCCCCTGGAGAGCCGAATGACATCAGGGGAAAGGAGGAGTGTGTGGCCACTGCTGTTATTCTCAATCCTCTTCATAACTGGGTGGATCTGATTTGCAGCCAAGTGCATCGCTGGATCTGTGAAGGCAACCGCCTGCAGCTCACAGCCTAGGTGCCGTGATCTGGTTACACTGTGGCTGCGTTTCAGTAtcagtgtatacacacacattttaaaattctcaCTAGCAATCAAATTATAAGATCATGTTCATGttaattttttaaatgggttaacaacaataaaactaaaacagaggCAGAACAAGGAACTATATGTGTATGGCAAGAACTTAGATTTTATTAACTCAGAGTATGTGTACTAAGATTTCAGACTGCTTATTTAGCTTTTTgagaataataatttgtaatactATTACctatcagtgtgtgtgggggggtgtttaacaaaattgtattgatGTTGGGAAGAAAGATTGTTGTCTCGTCTATTTTATATATCAGTCAATACTCCTTAATAACTGCTGATATACTGAAATTGGAACAATACCCAACTTaactgttgatttattttatgcttctgtgtatttgttaataaaagAATTGTAATCAGAGCACAACATATGGTATACATGTAGTGTGCTCCATATTTCATATGAGGATATGTACTGTCGGAAATTCACTTGTGTAGAGGGGCAAATCCCTTATAGTCCAGTCATGCTATGACAGAGGGGGTTAACCCACCACcaattgcaaaatatatgtatttttttttcagttttcaacccagaaaattaaaaaaaaaaaaaactataaatctTATATCATCCAAGTAGTGGAACAGTATCTCATTGACATAAATCCAATATGGCCGACAAGACATTACAATTTCAAGCCTATATGAGGAGTTTAATTCCATTTTAGTAGATATTTTAACACTAATTTTGATAAAACAGTGTCtattatatatcaatatatgttattgaaagaaaaccaaatgttaaaatgttttcttaaatgatATAATGATGTTTTATCAAG

Function

GO: NA

KEGG:

id description
K10061 CLEC4G; C-type lectin superfamily 4 member G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12047 lncRNA downstream 109375 55779425 ~ 55780607 (-) True G9719
TU12027 lncRNA downstream 146685 55737565 ~ 55743297 (-) True AMCG00004649
TU12028 lncRNA downstream 146685 55737565 ~ 55743297 (-) False AMCG00004649
TU12021 lncRNA downstream 167969 55721706 ~ 55722013 (-) True G9701
TU12020 lncRNA downstream 169765 55719964 ~ 55720217 (-) True G9700
TU12085 lncRNA upstream 3781 55897856 ~ 55898062 (-) True G9751
TU12137 lncRNA upstream 111976 56006051 ~ 56008038 (-) True AMCG00004660
TU12143 lncRNA upstream 139423 56033498 ~ 56035949 (-) True G9794
TU12446 lncRNA upstream 172474 56066549 ~ 56068862 (-) True G10007
TU12474 lncRNA upstream 212638 56106713 ~ 56109085 (-) True AMCG00004665
AMCG00004654 mRNA downstream 19022 55868647 ~ 55870960 (-) True AMCG00004654
AMCG00004653 mRNA downstream 43811 55814402 ~ 55846171 (-) True AMCG00004653
AMCG00004649 mRNA downstream 150450 55738192 ~ 55739532 (-) False AMCG00004649
AMCG00004648 mRNA downstream 204996 55682452 ~ 55684986 (-) True AMCG00004648
AMCG00004641 mRNA downstream 260999 55614612 ~ 55628983 (-) True AMCG00004641
AMCG00004660 mRNA upstream 113205 56007280 ~ 56008866 (-) False AMCG00004660
AMCG00004663 mRNA upstream 199034 56093109 ~ 56096391 (-) True AMCG00004663
AMCG00004665 mRNA upstream 213679 56107754 ~ 56108999 (-) False AMCG00004665
AMCG00004664 mRNA upstream 219330 56113405 ~ 56115924 (-) True AMCG00004664
AMCG00004662 mRNA upstream 253412 56147487 ~ 56162331 (-) True AMCG00004662
TU12067 other downstream 53805 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 338757 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 346429 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 469924 55367585 ~ 55420058 (-) True G9604
TU12437 other upstream 586265 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 718952 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 791662 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 853716 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 878427 56772502 ~ 56775440 (-) True G10079

Expression Profile