RNA id: AMCG00004653


Basic Information

Item Value
RNA id AMCG00004653
length 2292
RNA type mRNA
GC content 0.59
exon number 11
gene id AMCG00004653
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55814402 ~ 55846171 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAAGGAAGCAACACCGTATTACCGATAAAACTACCGAGTATTATGAGTCTGATACATAACCTACATGACTTTTCTGCAATCACGTAATGTACAGCTGTCTGGAAAGCTATATGggcacaaataatgtgttaaacaaCCTGGGGACAAATTGAACGTCCTAAATATACTGCCACACCCAGAGAAGTGCGTTTTTGAGAACCATTCCCATTTCCTGTGCATCTGGAGCGGCTGCTCAGGCTGAGCCCCACTCGGTCGGTACCTCCGCAGCCGCGCTGCTCCTCCCCTCGGTCTGGCGTCCTCTAGCGGTACCGGGCCGCCATAGCCGCGCAGGGTGACGTCACCCCACAGTCCTGGCCCGCGCTCCGCAAAAtggagctttttatttttttcacagcaGCCAAGTCCGTCTTCAATAAGCCAGCGAGCCGGGCCAAGAGGCCGGGCGGAGCAGCGCGACGCCGTGACGAGTCGGCCAGGGCACACTAGACCGACACTGAGTTTGAACTGTTTCGGGGCAGACGCGGGAGGCGCCGTACCGAGGAACCTGGGGGTCGAGATTATCagagttgctgttgttgttgtatcGATTCTCCGGAGCGGCCGCCATCTTGGAGCTGTCTTTGTTGCAACTGGACCTCACTCGCCGGAAGTAGTGTCACAACACCCGCCGTTTTCCCCTCTTTTGACCTCACTCACCGGAAGCGCAGCGCAGACAGTCGCTGTTGCCTCCctcggaaaaaaaaaaacgagagcGAGCGAgcaggaggagagaaaaaaaagaaaaaaaagtcctcGCGCGGATCTGGGCCCCCGAACAATCCGGGGCTTTTGGACCAAGTTTCTCGCCGGCTCGGTTTCCTCGCTTCGAGCCGCCGCCGGGGGGAGGGGATCCGCCGCCAGCGCTGGAATGATGGAAGATTCCCATTTTAACTCATCGTATTTCTGGTCTCCAGTTCCCACAGTGCAAGGACAGaTTGAGAACGCCATGTTTCTCAACAAGATGAAGGAGCAGTTGGCCCCGGATAAGGCCTCCTCATTCCCCCactcctcgtcctcgtcctctcACTACCCTACGGCTGTGCTCACTGTGCCCCCAGTCACCATGGAGGCGGCGGGGGGAGGCAGCGGGGGTGGCAGCCGGGGGACCAAGCAGGAAGGAGGGGGGGGACCCTCACTGGGAGCGGGGCATctgcaccccccccacacctcccAGAACATCACTGTGGTCCCTGTGCCTTCCACTGGCATAATGACTGCAGCTGGTCTCGTGATCACAACCCCCCCGGGGGCCCTGGTCTCCAgccccccctcctcttcccaGTCCTTCGTCACTGGACACCCCACTACCACCATGATTGTGTCTACGCTGCATCCCCCACTGACAGACAAGCAGAAATCCGAAGATGGTGCCCAGTCCTCCCCGGTCGTCATGGCGGCACCCTCGAAGCGTGGTAGGAAGAAGAAATCGGTGCTGCCACGAGCGGGGCCGGGGGGGCCTGTCGGTGTGACCGGGCACAGTTTATCGGCAGGCAGCGATGCTCTAATTCTCGCTCACCTGGCAGCCGGAGGACAGCACCACACAACCGACCCCTATGACCTTTCTAATGATGAGGATGACCACGGAACTAAGGACGGAAACAAATCCTACAGGTGCAGGATGTGTGCAGTGACGTTCTTCTCCAAGTCAGACATGCAGATTCACGCCAAGTCACACACGGAAGCCAAACCCCACAAGTGCCCGCACTGCTCCAAGTCCTTCGCCAACTCCAGCTACCTGGCCCAGCACATCCGCATCCACAGCGGCGCCAAGCCCTACACCTGCTCCTACTGCCAGAAAACATTCAGGCAGCTCAgATCCACACTGGTGACCGGCCATATAAATGTGTTCACCCTGGATTCTCACCGTCGGCAACACAACAAGGACAAGCCATTCAAGTGTCACAACTGTCACCGCGCCTACACCGATTCAGCCAGCCTGGAGGTGCACCTGAGCACGCACACCGTCAAACACGCCAAGCTGTACAGCTGTGGCATGTGCAACCGCGCCTACACCTCCcagcagcggcggcAGCGGCGGTGGCCCAGAGCGCCCactctcagcagcagcagcagcaacagcagcagcagcagcagcagggcggAGGGGCAGGCgcgggtgggggggTACAAGACGGTGGCGGCCGGCGAGATCCAGTACAAACCAGTCAGCGTGAGTGAGCTGCCCACACACAAAGACCTCTGTCTCACTGTGGCCACCTCCACTATACAGGTGGAACACCTCAACTCCTAG

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12047 lncRNA downstream 33795 55779425 ~ 55780607 (-) True G9719
TU12027 lncRNA downstream 71105 55737565 ~ 55743297 (-) True AMCG00004649
TU12028 lncRNA downstream 71105 55737565 ~ 55743297 (-) False AMCG00004649
TU12021 lncRNA downstream 92389 55721706 ~ 55722013 (-) True G9701
TU12020 lncRNA downstream 94185 55719964 ~ 55720217 (-) True G9700
TU12082 lncRNA upstream 44082 55890253 ~ 55894086 (-) False AMCG00004652
TU12085 lncRNA upstream 51685 55897856 ~ 55898062 (-) True G9751
TU12137 lncRNA upstream 159880 56006051 ~ 56008038 (-) True AMCG00004660
TU12143 lncRNA upstream 187327 56033498 ~ 56035949 (-) True G9794
TU12446 lncRNA upstream 220378 56066549 ~ 56068862 (-) True G10007
AMCG00004649 mRNA downstream 74870 55738192 ~ 55739532 (-) False AMCG00004649
AMCG00004648 mRNA downstream 129416 55682452 ~ 55684986 (-) True AMCG00004648
AMCG00004641 mRNA downstream 185419 55614612 ~ 55628983 (-) True AMCG00004641
AMCG00004640 mRNA downstream 280257 55529650 ~ 55534145 (-) True AMCG00004640
AMCG00004637 mRNA downstream 351676 55460253 ~ 55462726 (-) True AMCG00004637
AMCG00004654 mRNA upstream 22476 55868647 ~ 55870960 (-) True AMCG00004654
AMCG00004652 mRNA upstream 43811 55889982 ~ 55894075 (-) True AMCG00004652
AMCG00004660 mRNA upstream 161109 56007280 ~ 56008866 (-) False AMCG00004660
AMCG00004663 mRNA upstream 246938 56093109 ~ 56096391 (-) True AMCG00004663
AMCG00004665 mRNA upstream 261583 56107754 ~ 56108999 (-) False AMCG00004665
TU11944 other downstream 263177 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 270849 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 394344 55367585 ~ 55420058 (-) True G9604
TU11906 other downstream 425463 55382216 ~ 55388939 (-) False G9608
TU11665 other downstream 1194347 54576640 ~ 54620055 (-) False G9414
TU12437 other upstream 634169 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 766856 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 839566 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 901620 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 926331 56772502 ~ 56775440 (-) True G10079

Expression Profile