RNA id: AMCG00004663


Basic Information

Item Value
RNA id AMCG00004663
length 957
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00004663
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56093109 ~ 56096391 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGAAGTGGAGCAGCTTCGCAAAGAGGCAGAGACCCTCAAAAATCAAATCACTGAAGCACGAAAGGCAGTGGCCGACACGACCTTGGCGGACATCGTCGCAGGGACAGAGGTAGTGGGGCGTATCCAGATGAGGACCAGGAAGACGCTCAGAGGACACCTGGCCAAGATCTACGCCATGCACTGGAGCACCGACTCCAGGTTGTTGGTCAGTGCCTCACAGGATGGAAAGTTGATTGTGTGGGACAGCTACACAACTAATAAGGTGAATGCAATCCCTCTGAAGTCCTCGTGGGTGATGACATGCTCATACGCTCCCTCTGGGAACTTTGTGGCATGTGGAGGCCTGGACAACATGTGCTCCATCTACAACCTCAAGACCAGGGAGGGCAATGTCAAAATCGTGACCAGCTCTGGAGACACCACCTGCGCTCTATGGGATATTGAGACAGGCACGCAGAAGACAGTGTTCACAGGCCACACTGGAGACTGCATGAGCTTGGCTGTCTCGCCCGAATTCAACCTGTTCATCTCCGGGGCCTGCGACTCCTCGGCCAAGCTGTGGGACGTCCGGGAGGGAGCCTGCAGGCAGACCTTCACTGGGCACGAATCAGACATCAACGCCATCTGCTTCTTTCCCAATGGTAATGCCATCTGCACAGGCTCAGATGATGCCACCTGCAAGCTCTTTGACCTCCGCGCTGACCAGGAGCTGATTAGTTTTTCCCACGAGAGCATCATCTGTGGCATCACCTCCATTGCCATGTCCCGCAGCGGCAGGCTCATCCTGGCCGGGTACGATGACTTCAACTGCAACATCTGGGACGCCCTGAAGGCCGAGAGAGTGGgagTTCTCTCTGGTCATGATAACCGTGTAAGCTGCATTGGAGTGACCTGTGATGGCATGGCTGCCTGCACAGGATCCTGGGATAGCTTCCTGAAAATCTGGAACtga

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K07825 GNB3; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12446 lncRNA downstream 24247 56066549 ~ 56068862 (-) True G10007
TU12143 lncRNA downstream 57160 56033498 ~ 56035949 (-) True G9794
TU12137 lncRNA downstream 85071 56006051 ~ 56008038 (-) True AMCG00004660
TU12085 lncRNA downstream 195047 55897856 ~ 55898062 (-) True G9751
TU12082 lncRNA downstream 199023 55890253 ~ 55894086 (-) False AMCG00004652
TU12474 lncRNA upstream 10322 56106713 ~ 56109085 (-) True AMCG00004665
TU12488 lncRNA upstream 33051 56129442 ~ 56130558 (-) True G10034
TU12516 lncRNA upstream 250482 56346873 ~ 56352140 (-) False AMCG00004672
TU12521 lncRNA upstream 257537 56353928 ~ 56354406 (-) True G10061
TU12522 lncRNA upstream 257537 56353928 ~ 56354406 (-) False G10061
AMCG00004660 mRNA downstream 84243 56007280 ~ 56008866 (-) False AMCG00004660
AMCG00004652 mRNA downstream 199034 55889982 ~ 55894075 (-) True AMCG00004652
AMCG00004654 mRNA downstream 222149 55868647 ~ 55870960 (-) True AMCG00004654
AMCG00004653 mRNA downstream 246938 55814402 ~ 55846171 (-) True AMCG00004653
AMCG00004649 mRNA downstream 353577 55738192 ~ 55739532 (-) False AMCG00004649
AMCG00004665 mRNA upstream 11363 56107754 ~ 56108999 (-) False AMCG00004665
AMCG00004664 mRNA upstream 17014 56113405 ~ 56115924 (-) True AMCG00004664
AMCG00004662 mRNA upstream 51096 56147487 ~ 56162331 (-) True AMCG00004662
AMCG00004671 mRNA upstream 88826 56185217 ~ 56212864 (-) True AMCG00004671
AMCG00004672 mRNA upstream 187603 56283994 ~ 56384870 (-) True AMCG00004672
TU12067 other downstream 256932 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 541884 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 549556 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 673051 55367585 ~ 55420058 (-) True G9604
TU12437 other upstream 383949 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 516636 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 589346 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 651400 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 676111 56772502 ~ 56775440 (-) True G10079

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019508 True 1958 mRNA 0.46 9 NC_007127.7 12022543 ~ 12049762 (+)
eurasian perch (Perca fluviatilis) TU101106 True 1202 lncRNA 0.52 8 NC_053118.1 24119317 ~ 24122009 (+)
mexican tetra (Astyanax mexicanus) TU101106 True 3971 lncRNA 0.37 2 NC_035904.1 19761774 ~ 19765765 (+)