RNA id: AMCG00004672


Basic Information

Item Value
RNA id AMCG00004672
length 2547
RNA type mRNA
GC content 0.56
exon number 17
gene id AMCG00004672
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56283994 ~ 56384870 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAGgctgctGTGTGTCAATCAGTGCTGGGGGGCCGTGACTCCACCCCGGGCCCCTGTGCTGTTCGGGGAGGTGCTGTCCCCAGGGTACCCCGGCCCCTATCCCGCTTCTGTTAAATTGCAGTGGGAACTGGAGGTACCCCAGGGGTACAACCTCCTGCTCTCCTTCACACACTTGGACATTGAGCCATCACAGCACTGTCACTATGACTCACTGATGAATCAGTACCGGTCATTGATCCAGTACCGCTGCAATGAGCCATTCTACAAGCTGCCAACAAAGGGTGATGTACCGTCACTCACGCTCAGTGCTGTAGTGCAGTGTCCAGCCGCGGCTCTGGCCCTCCTGCCAGTGGTGTGGGCACAGTGCATGGTGCTGCTCTATATGGAAGAGCCCAGTGAAGTGGAGGCTGATGAGGAAGCCAGGGTCCACTGTGATGTTGTAGTGACAGGAGAGGCCAGGAGGGGAGGGACCCAGCGGTCACCCACCAGTGCCCCACCTGCTCGTCCCCAAAGAGTAATCAGGAGCACCTGCCATGGAAACGCCCCCTGCACCGCATCCTGGCCTCCCAGAATCCTCTGCGTCTTGGTGGGGGAGACAGTTGGCTgcccacacactgacagaagGAGTAGGGTTAGAagaagaaagggagggagggagaggaggaaggaaAGATGGAGTGTGGAGAGGaagaaggaaggagagggatGGAGTAGAGAGAGGGATGGCAGAGGGAGAAAGGGGGACGAAGATGAGAGGGGGAAAAGCTATGCCTCTGGCTGGGGCATCACCGAGGAATATATGATCACCAACAAGCTGCGCTTCATTTCCCTGCCTGTGGTGGACCAAGACAAGTGCCGTATTTCCATCgacaaacagagaggaaacAGAAAAGGGATCTCTGAGCTCACGGACAACATGTTCTGCGCTGGACTGCCCGAGGGGGGTGGAGACACCTGCCAGGGTGACAGTGGGGGGGCGTTTGTACTGCGGGACGGGGCAGGGGAGCGGTATTACGCAGCCGGGGTGGTGTCCTGGGGTATTAACTGTGGGGAGACGGGCTCCTATGGGGTTTACACTAGAGTGGGGAACTACAGGGCCTGGCTTAGAGAGACAATGGGGGAGGGATCATCTGCTGTCTTTGAGAAGTGGAACAAGGAACACATCAGAATGTGGGTCTCCAGGAGGGAACTGGACAGTACTCCTCTAATTCACTTACCTGACAGCCAGCAGGACACTCAGAAGGCAGAAAACTCAAGGGAAGCTAAAAACCCTGCACCAGGATCCACAAGTTCCAGAGCCCACACAAGTTACTTTTTCAACATCACCAGGGGATCAAGAAAGACATTACCCTATTCGTCCGAGAAAACCACCAGCAAAGTTGAACCTATTGAAGTTGTGCTATATGTATGGAACCCCTGGAGGATGAGACCGAGGCCCACTCTGCTGGTCGGGGTTGCTAGGCCAGCCCGGCATAGTCCGCACACCGAGGCCCAGTCCTTGCCTGGTCTCCTGCTGGTGGTGGAGGTTCCAGTGGGCTTGTGTCAtgagcTATCAACAAGGATAGTTAAGGTGTTGGATGGGGACGGTGTTTGGGAGGGAGTGTGGCAGTGCCGGATCCGGTTGAGGCGGTGTGTGGAGAACCTGGAGAAGGTCTGCCACCTCCCCAGTACTATACAGATTGGTGAAGCTAGAGGGCTGGTCTACTATGATGTGATGCCAAAACTCTGCAGGCGGTGTCAGGGCCGAGACCACGTTGTTGCCCAGTGCACAGCGGTGGTCAGCTGCAAGTGTAAGGGAGTCCTGGCCAAGCTGCTGATTGACCTCAGGCCAGGAGATGTTTTGTTGACACTGGGGTCCTGGTACAGCCCCGACTTAAGAACAGTCCACTGGTCCAGGACTTCTCCCACCTTCACCCCagatctcagcagcacagACACAGTCCCGACCGTGCTGGTCTTTCGTGGCTCCCACAGCCAGCGGCAATCCCTGTGCAGCTTGATGCTCACGGCCTCTCACCAGGGAACTCCACCGGCACTCCTGGATCCTCCCGGCCGAACAGCCACGgaactgcaacacaaacaactgGCACAGTCAACTGAAGGAGCTGAGAATGAAACACAGAAGGCAAAGGCCCGTGGATTCCTCCATATTGTGAAAGATGGGGCCATCATCAAATTCTCCTGCTTCCTTCATGACTTGCTGACTCACCTCAGCAGCCTGTCCCTAACCATGCAGCGGTCCTCAGTGACCGTGGCCGAAGTCAATGACTACCTGTCCTCCATCCTGGCTTTAATGTTCAAATACACATCTGGAGCTCGGCAAAGACGCCAAGCCAGATTGCAGGAGCAACGAGACCAAAGACTGGAATCTTTGCTGGCAGACCAGGCAGAATGCTGGAAAGCTTTGGAGAGCGACACTGAGCAGCCGGCGGGCTATAGCAACAGGAGTACCATCTTCAATGAGATGCCCGTGCCACCAAGGCAGAGCAATCATGCCACTTGCAAGCATACAGCGGGGGAGCAGAGGCTGCAGCTACTGTAG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12488 lncRNA downstream 153436 56129442 ~ 56130558 (-) True G10034
TU12474 lncRNA downstream 174909 56106713 ~ 56109085 (-) True AMCG00004665
TU12446 lncRNA downstream 215132 56066549 ~ 56068862 (-) True G10007
TU12143 lncRNA downstream 248045 56033498 ~ 56035949 (-) True G9794
TU12137 lncRNA downstream 275956 56006051 ~ 56008038 (-) True AMCG00004660
TU12528 lncRNA upstream 85652 56470522 ~ 56471426 (-) True G10067
TU12530 lncRNA upstream 104698 56489568 ~ 56491763 (-) True G10068
TU12535 lncRNA upstream 130631 56515501 ~ 56516414 (-) True G10073
TU12554 lncRNA upstream 143746 56528616 ~ 56733600 (-) True G10082
TU12568 lncRNA upstream 221551 56606421 ~ 56647806 (-) True G10093
AMCG00004671 mRNA downstream 71130 56185217 ~ 56212864 (-) True AMCG00004671
AMCG00004662 mRNA downstream 121663 56147487 ~ 56162331 (-) True AMCG00004662
AMCG00004664 mRNA downstream 168070 56113405 ~ 56115924 (-) True AMCG00004664
AMCG00004665 mRNA downstream 174995 56107754 ~ 56108999 (-) False AMCG00004665
AMCG00004663 mRNA downstream 187603 56093109 ~ 56096391 (-) True AMCG00004663
AMCG00004674 mRNA upstream 16591 56401461 ~ 56409291 (-) True AMCG00004674
AMCG00004677 mRNA upstream 26115 56410985 ~ 56414424 (-) True AMCG00004677
AMCG00004678 mRNA upstream 32186 56417056 ~ 56422906 (-) True AMCG00004678
AMCG00004676 mRNA upstream 39718 56424588 ~ 56442956 (-) True AMCG00004676
AMCG00004675 mRNA upstream 65919 56450789 ~ 56482561 (-) True AMCG00004675
TU12067 other downstream 447817 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 732769 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 740441 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 863936 55367585 ~ 55420058 (-) True G9604
TU12437 other upstream 95470 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 228157 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 300867 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 362921 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 387632 56772502 ~ 56775440 (-) True G10079

Expression Profile