RNA id: AMCG00004674


Basic Information

Item Value
RNA id AMCG00004674
length 1260
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00004674
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56401461 ~ 56409291 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGGTACATCCAGGGGCTTGGTGTCCAGCCCGGGACATCCCCGCTACTACCCCGTTGAAGCATCCTGCTCCTACAGCCTCAGTGTGGATGAGGGCTACCAGTTCCAGCTGGACATCTTGTCTCCATTTGACATTgagcgagacagagagacaggggacTGCATAGACAAACTAGTGccccccccttcccccttgCTGACTGGATCGCATCAGCTAAAGATTCTGTTCAGTTCTGATGGGGGCGGGGCCAACACTGGCTTCACACTGACCTACAGTATCAAGGCCAAGACCTGCCCCAGTACAGTGACAGCCCATGCCTCCCTGGACCCCTCCAAGGCCATGTACGAGTACGGAGATACAGTGACTGTGCGCTGTGAGCTGGGCTTTGAGATCAGCATGCTGTCTACAGATGTGATCCTGAAGGTCATTGGAGTTTGTGGTGAGCCAGATTCCacgtcttcctcctcctcctcctcctcctctctctccatggGCCGTATCTTCGGGGGGGCATTGGCGGAGAAGGGCCAGATCCCTTGGCAACTGTTCGTGCCCAATCCCCGGGCCGGAGCCAGTCTGATCAGTGACCAATGGGCTCTGACCGCTGCCCACGTGGTGCCGGGTATCAAGGAACTGGTTCTGTATGGGGGAATGCTAGACGTGGGCGGAATCGAGAGAGGAGGGGACGGGACTTCAGAAAACGCCATCTTACTGGAGAGCAACAAGATCTTCGTCCACCCAGAATATAAACATGGCTCTAGCTTCGACAATGACATTGCCCTGATCAAACTGAAGATGCGTGCCCCGCTGGGTCCCAACCTGCGCCCCATCTGCCTCCCCCAGAGACAGGACGATGGGACAATGACCACTGGACGTCTGGGGATGGTGTCTGGCTGGGGCAACACAGAGGAAAGGAAGTTGAGCTCCAAGCTTCTATCTGTGGAAGTCCCGGTCATAGACAGGGAGATTTGTGGGAAGAGGAAAGATGGCAGCAGTCATGGTGGCAGATTGAGTTTCACAAAGAATATGTTCTGTGCCGGGGAGCCAGGGAAGGACAGCTGTAAGGGGGACAGCGGAGGCCCCTTTGCCCATAGGGAGAGGCTGGGACCAAGGGAAGGGGGCCAGGTGAGCTGGGGGCCCTACCGGCAGTACGGGGTGGTGTCCTGGGGGCCCATGTGTGAGGAAAGGGGCTACTACACTAAAGTTGACAACTACCTGGACTGGATCAGAGAGACTATGGAGAGGGAAGGGAAATAg

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12521 lncRNA downstream 47055 56353928 ~ 56354406 (-) True G10061
TU12522 lncRNA downstream 47055 56353928 ~ 56354406 (-) False G10061
TU12516 lncRNA downstream 49321 56346873 ~ 56352140 (-) False AMCG00004672
TU12488 lncRNA downstream 270903 56129442 ~ 56130558 (-) True G10034
TU12474 lncRNA downstream 292376 56106713 ~ 56109085 (-) True AMCG00004665
TU12528 lncRNA upstream 61231 56470522 ~ 56471426 (-) True G10067
TU12530 lncRNA upstream 80277 56489568 ~ 56491763 (-) True G10068
TU12535 lncRNA upstream 106210 56515501 ~ 56516414 (-) True G10073
TU12554 lncRNA upstream 119325 56528616 ~ 56733600 (-) True G10082
TU12568 lncRNA upstream 197130 56606421 ~ 56647806 (-) True G10093
AMCG00004672 mRNA downstream 16591 56283994 ~ 56384870 (-) True AMCG00004672
AMCG00004671 mRNA downstream 188597 56185217 ~ 56212864 (-) True AMCG00004671
AMCG00004662 mRNA downstream 239130 56147487 ~ 56162331 (-) True AMCG00004662
AMCG00004664 mRNA downstream 285537 56113405 ~ 56115924 (-) True AMCG00004664
AMCG00004665 mRNA downstream 292462 56107754 ~ 56108999 (-) False AMCG00004665
AMCG00004677 mRNA upstream 1694 56410985 ~ 56414424 (-) True AMCG00004677
AMCG00004678 mRNA upstream 7765 56417056 ~ 56422906 (-) True AMCG00004678
AMCG00004676 mRNA upstream 15297 56424588 ~ 56442956 (-) True AMCG00004676
AMCG00004675 mRNA upstream 41498 56450789 ~ 56482561 (-) True AMCG00004675
AMCG00004682 mRNA upstream 85365 56494656 ~ 56511693 (-) True AMCG00004682
TU12067 other downstream 565284 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 850236 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 857908 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 981403 55367585 ~ 55420058 (-) True G9604
TU12437 other upstream 71049 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 203736 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 276446 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 338500 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 363211 56772502 ~ 56775440 (-) True G10079

Expression Profile