RNA id: AMCG00004676


Basic Information

Item Value
RNA id AMCG00004676
length 1465
RNA type mRNA
GC content 0.55
exon number 12
gene id AMCG00004676
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56424588 ~ 56442956 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCGGGTGGGGGACTTGGTGACCCACATTCGGATCCAGAACACAGGAGATTACTATGACCTGTATGGTGGGGAGAAGTTCGCCACGCTGTCTGAGCTGGTGGAgtgGTACCATGGCCACCTGTCCGGCCCCAGTGCAGAGAAGCTCCTGTGGGAGAGGGGGGAGCCCGGCACATTCCTGGTCCGGGAGTCCCTGTCCAAGCCTGGCGATTTCGTTCTCTCCATCCTGACTAATGAGTtcagggaggtggggggggagcaAAGGGGCCGCGTGTCCCACGTCAAGATAATGTGCAAGGtgagagaggggcagggagagagaaagggacagGAGGGGGGACTGATTGGGCGCCGGAtcagggaggggaggagggaggcagaggggatggagagggagggggagagactGAAAATACAAGAGAATACTGAAATCACTGACCCCTCCCCTCTTCCCCCTCTTGCGTGCCAGAATGACCTTTACACGCTGGGCGGGGCCGAGGAATTCGATTCACTGACGGACCTGGTGGAGCACTTCAAACGCAAGGGCATCGAGGAGGTGTCTGGAGCACTTGTGCAGCTCAAACAGcCCTATTACTCGACCCGTGTGAACGCTGCGGACATTGACAGCCGGGTTCAGGtcctgcagacagagagagatgataCCAACAAGGCAGGATTCTGGGAGGAGTTTGACGCTTTGCAGAAACAGGAGGCTAAACTGAAGAAGAGTAGAGAAGAAGGGATGAGGCCAGAGAACAAGAGCAAGAACAGATACAAGAATATCCTACCCTttgaTGAGACCAGGGTAGTGTTACAGTCGGCCCAGGCAGGAGTTGTCGGCTCAGACTACATCAATGCCAACTACGTCACGaacATGCTGAGGGAGACTGGTGATCAGAAGGTGTACATTGCCACACAGGGCTGCCTGCTGTCCACTGTTAACGATTTCTGGCAGATGGTGTGGCAGGAGAACTCCCGGGTTATTGTCATGACGACCCGTGAGGTGGAGAAAGGCAGGGGAGAAAAGGAATTTGGGCGGTTCTTAGTGCGCAATGTGAGTGAGAGGGACGCCACAGACTACAAGATCAGAATCCTGGAGCTCAGCACCCTGGACacggtTGCTGGAATAGGCCGGACTGGCACCATTGTGGTGATTGACATGCTGGTAGAGACCATCGACACTAAAGgcCTGGACTGTGACATTGACATCCAGAAGTGTATTCAGATGGTGCGGGAGCAGCGGAATGCAAAGGAGGAGGTCTATGAGAACCTGGGTGGGAAGAGCAAGAAGGACGTGAAGAAGCAGCGATCGGAGGAGAAGAAGAGTGGCTCCGTGCGCAAGAGATAGAGGAGCAagtggggaggagagagagagagagagagagagagagagaggcagggagggagagagagagaggAGGGATGACGATGGCAGACacaaggaaaattaaaaatggaagaat

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12521 lncRNA downstream 70182 56353928 ~ 56354406 (-) True G10061
TU12522 lncRNA downstream 70182 56353928 ~ 56354406 (-) False G10061
TU12516 lncRNA downstream 72448 56346873 ~ 56352140 (-) False AMCG00004672
TU12488 lncRNA downstream 294030 56129442 ~ 56130558 (-) True G10034
TU12474 lncRNA downstream 315503 56106713 ~ 56109085 (-) True AMCG00004665
TU12528 lncRNA upstream 27566 56470522 ~ 56471426 (-) True G10067
TU12530 lncRNA upstream 46612 56489568 ~ 56491763 (-) True G10068
TU12535 lncRNA upstream 72545 56515501 ~ 56516414 (-) True G10073
TU12554 lncRNA upstream 85660 56528616 ~ 56733600 (-) True G10082
TU12568 lncRNA upstream 163465 56606421 ~ 56647806 (-) True G10093
AMCG00004678 mRNA downstream 1682 56417056 ~ 56422906 (-) True AMCG00004678
AMCG00004677 mRNA downstream 10164 56410985 ~ 56414424 (-) True AMCG00004677
AMCG00004674 mRNA downstream 15297 56401461 ~ 56409291 (-) True AMCG00004674
AMCG00004672 mRNA downstream 39718 56283994 ~ 56384870 (-) True AMCG00004672
AMCG00004671 mRNA downstream 211724 56185217 ~ 56212864 (-) True AMCG00004671
AMCG00004675 mRNA upstream 7833 56450789 ~ 56482561 (-) True AMCG00004675
AMCG00004682 mRNA upstream 51700 56494656 ~ 56511693 (-) True AMCG00004682
AMCG00004684 mRNA upstream 210226 56653182 ~ 56655085 (-) True AMCG00004684
AMCG00004685 mRNA upstream 223973 56666929 ~ 56672648 (-) False AMCG00004685
AMCG00004692 mRNA upstream 243331 56686287 ~ 56690184 (-) False AMCG00004692
TU12067 other downstream 588411 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 873363 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 881035 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 1004530 55367585 ~ 55420058 (-) True G9604
TU12437 other upstream 37384 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 170071 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 242781 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 304835 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 329546 56772502 ~ 56775440 (-) True G10079

Expression Profile