RNA id: AMCG00004685


Basic Information

Item Value
RNA id AMCG00004685
length 756
RNA type mRNA
GC content 0.63
exon number 5
gene id AMCG00004685
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56613027 ~ 56752935 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCGGACGATTCTTCTGCTGTTGGGAGCCGCTCTGTGGGCTACAGggtcaaaggtcacccGGGAGGGGCGGAGCCTGGAGCTGGTCGCTGTAGTGCctgaggagagagggagcgtgTTCTCCTGTGTGGTGCACCACCACGGAGACACAGGGACAGCTTCGCACACGCTGGCAGTCAGAGGAATCATGTCCCCCGCGAGAGACAGCACCGTGTTCGTGGCTGTGGGGGCGGCTGTGTCCCTGCCCTGCGTCTTCACCGAGGCGCTGTCCGCGCAGCAGAGCggctgggagagggagacagagggggCAGTCTCTCCTGTCCTCCGCCCCTCCTCCCTCGCTCCCTTCTCCTCCCAGGACGTGTCTCTCCAGCTGGCGGTGGCGGAGGAGAGGGATGCCGGGATGTACCGGTGCTACGGACAAGTGGAGGGGAAGAGGGTGGAGAGGAGGGTGCGGCTGGTCACTGCCAAAggtgaggaaaagaaggagggagaggagaagggagAAGGGGAAGAGCGaatgagtgagagagaaagagagggggagggaggcagaCAAATCTCGGTGACGACCTTCCCCCTCACCCTGACCTGTGAGCTCAGCAACAACACGGGGGTGCAGAGATACGAGTGGAGCCACGTGATCTTTGACTCCAACGGGACCCGGCTGGTGACCCCGCTGACCTCCGGTCCCAGTAACAGCTTCCTGGTCACAGGGAGACCACTGGCAGCCTTGGCAGACaggcaacaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12568 lncRNA downstream 19123 56606421 ~ 56647806 (-) True G10093
TU12535 lncRNA downstream 150515 56515501 ~ 56516414 (-) True G10073
TU12530 lncRNA downstream 175166 56489568 ~ 56491763 (-) True G10068
TU12528 lncRNA downstream 195503 56470522 ~ 56471426 (-) True G10067
TU12522 lncRNA downstream 312523 56353928 ~ 56354406 (-) False G10061
TU12556 lncRNA upstream 10489 56683137 ~ 56894619 (-) True G10083
TU12585 lncRNA upstream 18071 56690719 ~ 56691448 (-) True AMCG00004690
TU12589 lncRNA upstream 39741 56712389 ~ 56714188 (-) True G10108
TU12598 lncRNA upstream 80377 56753025 ~ 56754391 (-) True G10116
TU12557 lncRNA upstream 89397 56762045 ~ 56820786 (-) True G10084
AMCG00004684 mRNA downstream 11844 56653182 ~ 56655085 (-) True AMCG00004684
AMCG00004682 mRNA downstream 155236 56494656 ~ 56511693 (-) True AMCG00004682
AMCG00004675 mRNA downstream 184368 56450789 ~ 56482561 (-) True AMCG00004675
AMCG00004676 mRNA downstream 223973 56424588 ~ 56442956 (-) True AMCG00004676
AMCG00004678 mRNA downstream 244023 56417056 ~ 56422906 (-) True AMCG00004678
AMCG00004692 mRNA upstream 13639 56686287 ~ 56690184 (-) False AMCG00004692
AMCG00004690 mRNA upstream 18169 56690817 ~ 56691706 (-) False AMCG00004690
AMCG00004691 mRNA upstream 25673 56698321 ~ 56702513 (-) True AMCG00004691
AMCG00004693 mRNA upstream 32696 56705344 ~ 56705814 (-) True AMCG00004693
AMCG00004689 mRNA upstream 63195 56735843 ~ 56738249 (-) True AMCG00004689
TU12437 other downstream 182081 56480340 ~ 56484848 (-) False AMCG00004675
TU12067 other downstream 830752 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 1115704 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 1123376 55529663 ~ 55543553 (-) False AMCG00004640
TU11906 other downstream 1277990 55382216 ~ 55388939 (-) False G9608
TU12583 other upstream 13089 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 75143 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 99854 56772502 ~ 56775440 (-) True G10079
TU12607 other upstream 104478 56777126 ~ 56778469 (-) True G10121
TU12609 other upstream 116104 56788752 ~ 56792161 (-) True G10123

Expression Profile