RNA id: AMCG00004689


Basic Information

Item Value
RNA id AMCG00004689
length 1533
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00004689
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56735843 ~ 56738249 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTGGACCCCCGCGGTACCGGCGCCGCTGCTGCCCGGGCCCCGCGCTCTCCTCCTCGGCGCGCTGCTGCTCTGTGTGCCGCTGAGCCCCGCCGGCAGCCGCGCCGCGCCCCCCGCCCCGGCCGCGGAGCAGCTTCTGCAGGACTTTCTGGAGCAGTACAACGACCTCTTGACCTTAGATGACCTGGTCACCCTTGCCAGGGGGGACTCAAAGGTCGCCCCAAACTGGGCGCAGCCTCCCCCGGCCAATGAGAATGCTTGGTACCGCCTTCTGAAGGACCTGCTGGCCAATCGCAAGAGAGTATTGCCCGACCGGGAGAAGAAGGCGTGGTCGCGGGGCTGCTTTGGCCTGAAGCTCGACCGGATTGGCTCACTCAGTGGGCTGGGCTGCTAGCCATTGGCTGAGGTGCTCTGCTCACCCTCTCACCCTCCGTTGAGTTCTAGAACACCCTAGAATATGTTCCAGGAACAGCCCGATGCTTCTAGAACAGTGCTTCTAGAACCCAGCAGCTGCCTCGGGCACAGTGTGGGACCCCTCCAGcctcctctcctgtctgtcTTCCCCTCTTTTCCTCTTTGTGTTATTGTACCTCCTgatttttccttctctccctacttctgtctttctttctcccttttcaCTGCaccttcactctctctttcctgCCATATGTCCATCTTCCAATTCTTCCTCTGTCTATCTCTCCTTCTTTCTATCTTTTggctatttttatgttttgcttatttttctctcactttttctctcttctgctTTGTTCTGCTTCCACTTTCACCTGCCTTCtcacttctccctctctctctccctcttttcttctctctgtgaAGCTGATGAACAgactgtgttgttgtgtaggGTTCTGTAGtgttgtgtgctgctgtgtctgAATTGTGTTGCTGTAACTGTGGAATTGTGAGTTGTACTGGTTATATACAGATTGATGTggctttattttgtatctggCTGCTTTTGTGTCAGAGATGCAGGATTGTGTAGATATTATTGCCTCTAGCCTGGGCCCTATAGTACAATATACTATAGCCATATACTATAGTCCAATATAGGCCTTATATCGctatactatacaatactgtagtatactatactatagtccaatATAGACCCTATAGCCATgtcctatactatactatactattgtCAAATACCATCTCTATACTACAGTCTATACTCTACTCTATACTATTGAACTATAGTGTAGTTCAATATAGAGCCTAAAACTATACTATACAGTACACCAGACACCAATaatataatgatgatgatgatgatgataataataatatctcacTCAGTAGAGCTGTATGAAAGAGTACAGCACCTACTgacagagggagggatggagggagagagtttCTTACTGTAGAAAGTATACTGTTTTTACTGCATTTCTATGCTGATTGTAACTGATTGTATTGTGCTGATTTAACACAGTGACTTGTGTCAGATTGTAATAAAGTGCCGCATAATTGTCTAGATGGATGAGACTGAGCC

Function

GO:      GO:0044699

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12554 lncRNA downstream 2243 56528616 ~ 56733600 (-) True G10082
TU12589 lncRNA downstream 21655 56712389 ~ 56714188 (-) True G10108
TU12585 lncRNA downstream 44395 56690719 ~ 56691448 (-) True AMCG00004690
TU12568 lncRNA downstream 88037 56606421 ~ 56647806 (-) True G10093
TU12535 lncRNA downstream 219429 56515501 ~ 56516414 (-) True G10073
TU12598 lncRNA upstream 14776 56753025 ~ 56754391 (-) True G10116
TU12557 lncRNA upstream 23796 56762045 ~ 56820786 (-) True G10084
TU12606 lncRNA upstream 38877 56777126 ~ 56778469 (-) False G10121
TU12628 lncRNA upstream 122088 56860337 ~ 56861643 (-) True G10135
TU12555 lncRNA upstream 281046 57019295 ~ 57019807 (-) False G10082
AMCG00004693 mRNA downstream 30029 56705344 ~ 56705814 (-) True AMCG00004693
AMCG00004691 mRNA downstream 33330 56698321 ~ 56702513 (-) True AMCG00004691
AMCG00004690 mRNA downstream 44137 56690817 ~ 56691706 (-) False AMCG00004690
AMCG00004692 mRNA downstream 45659 56686287 ~ 56690184 (-) False AMCG00004692
AMCG00004685 mRNA downstream 63195 56666929 ~ 56672648 (-) False AMCG00004685
AMCG00004698 mRNA upstream 86772 56825021 ~ 56836934 (-) True AMCG00004698
AMCG00004699 mRNA upstream 108434 56846683 ~ 56853046 (-) True AMCG00004699
AMCG00004697 mRNA upstream 118107 56856356 ~ 56858606 (-) True AMCG00004697
AMCG00004704 mRNA upstream 159354 56897603 ~ 56910267 (-) True AMCG00004704
AMCG00004706 mRNA upstream 195148 56933397 ~ 56956495 (-) True AMCG00004706
TU12544 other downstream 41231 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other downstream 45351 56685737 ~ 56690492 (-) True AMCG00004692
TU12437 other downstream 250995 56480340 ~ 56484848 (-) False AMCG00004675
TU12067 other downstream 899666 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 1184618 55529663 ~ 55551225 (-) False AMCG00004640
TU12597 other upstream 9542 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 34253 56772502 ~ 56775440 (-) True G10079
TU12607 other upstream 38877 56777126 ~ 56778469 (-) True G10121
TU12609 other upstream 50503 56788752 ~ 56792161 (-) True G10123
TU12651 other upstream 287288 57025537 ~ 57028329 (-) True G10157

Expression Profile